View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14104_low_3 (Length: 600)
Name: NF14104_low_3
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Original strand, 32708492 - 32709057
Alignment:
| Q |
18 |
cgatcaactaagatttcttgatagcgatcaaagagctcatcaataatagactctccaaagtggctaactagcaaaggttcagaaacggctctcatgcact |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32708492 |
cgatcaactaagatttcttgatagcgatcaaagagctcatcaataatagactctccaaagtgtctaactagcaaaggttcagaaacggctctcatgcact |
32708591 |
T |
|
| Q |
118 |
gcatcacattgtatgcaccatcgccgagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattccaattcacttcagaaac |
217 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708592 |
gcatgacattgtatgcaccatcgccaagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattccaattcacttcagaaac |
32708691 |
T |
|
| Q |
218 |
tcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708692 |
tcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcc |
32708791 |
T |
|
| Q |
318 |
tcttcttttatggttccctaatccacagaaaaaaggaatttcatatatattaatatcttggtgaattcgatctatctagtagtgacgcatgatcaaatat |
417 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708792 |
tcttcttttatggttccctaatccacataaaaaaggaatttc----atattagtatcttggtgaattcgatctatctagtagtgacgcatgatcaaatat |
32708887 |
T |
|
| Q |
418 |
caacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708888 |
caacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgc |
32708987 |
T |
|
| Q |
518 |
tatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctttgc |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32708988 |
tatacttcttgtcactttttcttcctaaaaatgttagaatcatgcgaccaccttcaactacttcctttgc |
32709057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 451 - 577
Target Start/End: Original strand, 32627340 - 32627466
Alignment:
| Q |
451 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatg |
550 |
Q |
| |
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||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
32627340 |
tttacctccaagaccatgtcattaagagccatagccaaaagttcccaaatgtaacaacactccttgcttgttggattgtcgctttttcttcctacaaatg |
32627439 |
T |
|
| Q |
551 |
ttagaatcatgcgaccaccttcaacta |
577 |
Q |
| |
|
||| |||||||| ||| |||||||||| |
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|
| T |
32627440 |
ttataatcatgcaacccccttcaacta |
32627466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 32703490 - 32703557
Alignment:
| Q |
451 |
tttacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct |
518 |
Q |
| |
|
||||||||||||||||| ||||||||| | |||||||||| |||||||| ||| |||||||| ||||| |
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|
| T |
32703490 |
tttacctgcaagaccatttcattaagacccatagccataacttcccaaacgtaacaacactctttgct |
32703557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 32627031 - 32627132
Alignment:
| Q |
236 |
aaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcctcttcttttatggttccc |
335 |
Q |
| |
|
|||||||||||| | | |||||||||||||||||| |||||||||||| ||| ||| ||||||||||||| || | ||||||||||||| ||||| |
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|
| T |
32627031 |
aaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccc |
32627130 |
T |
|
| Q |
336 |
ta |
337 |
Q |
| |
|
|| |
|
|
| T |
32627131 |
ta |
32627132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 72 - 309
Target Start/End: Original strand, 27735896 - 27736133
Alignment:
| Q |
72 |
ccaaagtggctaactagcaaaggttcagaaacggctctcatgcactgcatcacattgtatgcaccatcgccgagtgattcagacatttgagactcacaag |
171 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || || ||||| || || ||||||| || |||| | ||||||||| ||||||| ||| ||| | |
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|
| T |
27735896 |
ccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccatcatctctgagtgattctgacatttcagattcaaagt |
27735995 |
T |
|
| Q |
172 |
caagagcattccattgatcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttc |
271 |
Q |
| |
|
||| ||||| || | |||||||||||||||||| ||||||||||| ||||| || |||| |||||||||||| |||||||||||||| |||||||| |
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|
| T |
27735996 |
caaaggcattacaatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaatgatccttcattgagaacttccaacttcacttc |
27736095 |
T |
|
| Q |
272 |
cgatggagatggagtgtattgagggatgttgaaagtat |
309 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||| |
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|
| T |
27736096 |
agatggagatggataataattagggatgttgaaagtat |
27736133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 577
Target Start/End: Original strand, 27736240 - 27736364
Alignment:
| Q |
453 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgtt |
552 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||| | ||||| | ||| |||||||||| |||| |
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|
| T |
27736240 |
tacctgcaagaccatatcattaagggccatagccatgagttcccaaatgtaacaacactccttgcttgatggattgtcgcatttccttcctaaaagtgtt |
27736339 |
T |
|
| Q |
553 |
agaatcatgcgaccaccttcaacta |
577 |
Q |
| |
|
|||||||| || | |||||||||| |
|
|
| T |
27736340 |
agaatcatttgagctccttcaacta |
27736364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 577
Target Start/End: Original strand, 5810967 - 5811091
Alignment:
| Q |
453 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgct--atacttc-ttgtcactttttcttcctaaaaat |
549 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| |||||||||||||| | | |||||||||| || || ||| |||||| |||||||||| |
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|
| T |
5810967 |
tacctgcaaaaccatatcattaagagccatagccatgagttcccaaatgtaaccagactccttgcttgatggatcactgt---tttttcgtcctaaaaat |
5811063 |
T |
|
| Q |
550 |
gttagaatcatgcgaccaccttcaacta |
577 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
5811064 |
gttagaatcatgtgaccaccttcaacta |
5811091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 5810680 - 5810796
Alignment:
| Q |
189 |
tcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgt |
288 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| | |
|
|
| T |
5810680 |
tcaagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcggtgagaacttccaactcaacctcagatggagatggataat |
5810779 |
T |
|
| Q |
289 |
attgagggatgttgaaa |
305 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
5810780 |
agttagggatgttgaaa |
5810796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 575
Target Start/End: Complemental strand, 8030641 - 8030519
Alignment:
| Q |
453 |
tacctgcaagaccatatcattaagagctatagccataagttcccaaatgtagcaacactccttgctatacttcttgtcactttttcttcctaaaaatgtt |
552 |
Q |
| |
|
||||| ||||||||| |||||||| || | ||| | ||| |||||||| ||||||||||| |||||||| || | |||||||||||||| || | ||| |
|
|
| T |
8030641 |
tacctccaagaccatgtcattaagggcaacagcaagaagctcccaaatatagcaacactctttgctatatttatcatcactttttcttcccaagattgtg |
8030542 |
T |
|
| Q |
553 |
agaatcatgcgaccaccttcaac |
575 |
Q |
| |
|
|||| ||| ||||| || ||||| |
|
|
| T |
8030541 |
agaaccatacgacccccgtcaac |
8030519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 498
Target Start/End: Original strand, 21943087 - 21943132
Alignment:
| Q |
453 |
tacctgcaagaccatatcattaagagctatagccataagttcccaa |
498 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
21943087 |
tacctgcataaccatatcattaagagccatagccaaaagttcccaa |
21943132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 463 - 499
Target Start/End: Complemental strand, 20116800 - 20116764
Alignment:
| Q |
463 |
accatatcattaagagctatagccataagttcccaaa |
499 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
20116800 |
accatatcattaagagctgtagccaaaagttcccaaa |
20116764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 20118000 - 20117936
Alignment:
| Q |
220 |
ccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatgga |
284 |
Q |
| |
|
||||| |||||||| |||||| ||||| | |||||||||||||||||||| | |||||||||| |
|
|
| T |
20118000 |
ccaattgatcgatgacaaatgacccttcagttagaacttccaatttcacttcagttggagatgga |
20117936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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