View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14104_low_5 (Length: 492)
Name: NF14104_low_5
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 33495522 - 33495051
Alignment:
| Q |
19 |
ggggcatgattaaatgtaacgcggatgccacgatttttcaaaacaacacaatatatagcaagatatggcatatgttatcggaactcttgaggcgaactcc |
118 |
Q |
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| T |
33495522 |
ggggcacgattaaatgtaacgcggatgccacgatttttcaaaacaacaaaata----gcaggatatggcatatgttatcgaaactcttgaggcgaactcc |
33495427 |
T |
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| Q |
119 |
ttttgggtaaatcttccatcgttcattcatctttatctcttctaaaagccgaggca--atcgctttacttgaagctatgaaattatcaatctcctttgga |
216 |
Q |
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| T |
33495426 |
ttatgggtaaatcttccatcattcattcatctttatctcttctagaagccgaggcacaattgctttacttgacgttatgaaattatcaatctcctctgga |
33495327 |
T |
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| Q |
217 |
ttccatcatgtgtactatgaaactgacagtaagatcctaactaaagccatcctctctatcattatccaccacaatgagtttggtgatcttgttactcaat |
316 |
Q |
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| T |
33495326 |
ttccatcatgtgtactatgaaactgacagtaagatcctaactaaagccatcctctctatcattatccaccacaatgagtttggtgatcttgttactcaat |
33495227 |
T |
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| Q |
317 |
gtaggaatcttttgattacaaattccagctataagttgttgattattaagaggcaagcaaatagagcttctcatagtataactagagcatctttgtatca |
416 |
Q |
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| T |
33495226 |
gtaggaatcttttgattacaaattccggctttaaggtgctgcttattaagaggcaagcaaatagagctactcatagtataactagagcatttttatctca |
33495127 |
T |
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| Q |
417 |
tcacagccccgtcattttcaattatgtgccatcttctgtgtactctttgtttatgaaagaaatgaattagtttgcc |
492 |
Q |
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| T |
33495126 |
ttctagtccctacattttcaattatttaccatcttctttgtactctttgtttatgaatgaaatgaattagtttgcc |
33495051 |
T |
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Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 489
Target Start/End: Original strand, 4244056 - 4244520
Alignment:
| Q |
21 |
ggcatgattaaatgtaacgcggatgccacgatttttcaaaacaacacaatatatagcaagatatggcatatgttatcggaactcttgaggcgaactcctt |
120 |
Q |
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| T |
4244056 |
ggcatgattaaatgtaacatggatgccgcaatttttcaaaacaacgt----tgcagcaggttatggcatctgttgccgaaactctgaagatgaactcctc |
4244151 |
T |
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| Q |
121 |
ttgggtaaatcttccatcgttcattcatctttatctcttctaaaagccgaggcaatcgctttacttgaagctatgaaattatcaatctcctttggattcc |
220 |
Q |
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| T |
4244152 |
ttgggtaaatctgccatcattcactcatctttatctgttctagaagccgaggcaatcgttttacttgaagctatgaaattatcaatctcttctggattcc |
4244251 |
T |
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| Q |
221 |
atcatgtgtactatgaaactgacagtaagatcctaactaaagccatcctctctatcattatccaccacaatgagtttggtgatcttgttactcaatgtag |
320 |
Q |
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| T |
4244252 |
atcatgtgtactatgaaactgacagtaagatccttactaaagccattctctctaacactatccaccacaatgagtttggcgatctctttactcaatgtag |
4244351 |
T |
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| Q |
321 |
gaatcttttgattacaaattccagctataagttgttgattattaagaggcaagcaaatagagcttctcatagtataactagagcatctttgtatcatcac |
420 |
Q |
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||||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| | ||||| |
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| T |
4244352 |
gaatcttttgattacaaattccaactttaaggtgtcatttattaagaggcaagcaaatagagctgctcatagtatagctagagcatctttatctcatcct |
4244451 |
T |
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| Q |
421 |
agccccgtcattttcaattatgtgccatcttctgtgtactctttgtttatgaaagaaatgaattagttt |
489 |
Q |
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| T |
4244452 |
agctcttacattttcaattatgtaccatcttctttgtactctttgtttatgaatgaaatgaattagttt |
4244520 |
T |
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