View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14104_low_8 (Length: 459)
Name: NF14104_low_8
Description: NF14104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14104_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 445
Target Start/End: Original strand, 26949091 - 26949518
Alignment:
| Q |
6 |
gtctgctactgcttgttgcagaaagaacaatgcctttgcatctttctgtttgttttccttcaactcgatcctttttctgagctgcattgagagttgaaat |
105 |
Q |
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| T |
26949091 |
gtctgccaccgcttgttgcagaaagaacaatgcatttgcatctttctgtttattttccttcaactc----ctttttctaagctgcattgagagttgaaat |
26949186 |
T |
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| Q |
106 |
gtctgcggaaatagtaaatccttcatctacaatttcccataaatcttgagatcnnnnnnntgtcttcattttaatgctgcaaaaaacatagttttcacca |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |||||| |||||||||||||| |
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| T |
26949187 |
gtctgcggaaatagtaaatccttcatctacaatttcccataaatcttgagagcaaaaatatatcttcattttaatgctccaaaaatcatagttttcacca |
26949286 |
T |
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| Q |
206 |
ttgaaagtagggatagtcatagatgatggttgatcaattgaatggtattagccatgtcttagggaaaaatttagaaatggtgtaggatataaggagggtt |
305 |
Q |
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| T |
26949287 |
ttgaaagtagagataatcatagatgatggttga--------atggtattagccatgtcttagggaaaaatttagaa-tggtgtaggatataaggagggtt |
26949377 |
T |
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| Q |
306 |
tggatggaaataggtgaatagattttctacgcccaatatatgattgaacataactctgatgccactgttggtatttt-ggtagtagtgatagtttagagt |
404 |
Q |
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| T |
26949378 |
tggttgcaaataggtggatagattttctacgcccaatatatgatcgaacgtagctttgatgccactgttagtattttgggtagtagtgatagtttagagt |
26949477 |
T |
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| Q |
405 |
gtagttggatagtgaagaaggctttagttgatagttgaaat |
445 |
Q |
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| T |
26949478 |
gtagttggatagtaaagaaggctttagttgatagttgaaat |
26949518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 26947130 - 26947205
Alignment:
| Q |
371 |
tgttggtattttgg-tagtagtgatagtttagagtgtagttggatagtgaagaaggctttagttgatagttgaaat |
445 |
Q |
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| T |
26947130 |
tgttagtattttgggtattagtgatagtttagagtgtagttggatagtgaagaaggctttagttgatagttgaaat |
26947205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 5984989 - 5985049
Alignment:
| Q |
369 |
actgttggtattttggtagtagtgatagtttagagtgtagttggatagtgaagaaggcttt |
429 |
Q |
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| T |
5984989 |
actgttagtattttggtagtagtgatagtttagagtgtagttggatagtgaagaaggcttt |
5985049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 8542093 - 8542033
Alignment:
| Q |
385 |
tagtagtgatagtttagagtgtagttggatagtgaagaaggctttagttgatagttgaaat |
445 |
Q |
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| T |
8542093 |
tagtagtgatacttaagagtgtagttggatagtgaagaaggctttagttgatagttgaaat |
8542033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 438
Target Start/End: Complemental strand, 11476975 - 11476931
Alignment:
| Q |
394 |
tagtttagagtgtagttggatagtgaagaaggctttagttgatag |
438 |
Q |
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| T |
11476975 |
tagtttagagtgtagttggatggtgtagaaatctttagttgatag |
11476931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 40286135 - 40286076
Alignment:
| Q |
386 |
agtagtgatagtttagagtgtagttggatagtgaagaaggctttagttgatagttgaaat |
445 |
Q |
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| T |
40286135 |
agtagtgatagtttagagtgtagttggatagtgaagaaggctttggttgatagttgaaat |
40286076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 12841937 - 12841979
Alignment:
| Q |
292 |
atataaggagggtttggatggaaataggtgaatagattttcta |
334 |
Q |
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| T |
12841937 |
atataaggagggtttggttggaaataggtggatagattttcta |
12841979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 441
Target Start/End: Original strand, 13465175 - 13465211
Alignment:
| Q |
405 |
gtagttggatagtgaagaaggctttagttgatagttg |
441 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
13465175 |
gtagtttgatagtgaagaaggctttagttgatagttg |
13465211 |
T |
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