View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_high_13 (Length: 254)
Name: NF14105_high_13
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 21374414 - 21374623
Alignment:
| Q |
26 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtgga |
125 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| ||||| ||| || |||||||||||||||||| ||||||||||| |||| |||||| |
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| T |
21374414 |
aagcattttatttggttagctatgcatggtaaccttccaacgaatgcatttcgggatggtagacatttaacctcagattcatcatgca-agagctgtgga |
21374512 |
T |
|
| Q |
126 |
gctagtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatttcaattctt |
225 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21374513 |
gctagtattgagtcacttcttcacacctttagagattgccctctctcattggcgatctgggatgccttgttgttcaacaaagatacaaattccaattctc |
21374612 |
T |
|
| Q |
226 |
atgatttcaat |
236 |
Q |
| |
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| ||||||||| |
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| T |
21374613 |
aggatttcaat |
21374623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 19817086 - 19816921
Alignment:
| Q |
57 |
accttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagctagtattaagtcacttcttcacaccttta |
156 |
Q |
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|||||||||||||||| ||| || ||||||||||||||||| ||||||||||| |||| |||||||||| |||| ||||||||||||||||||||| |
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| T |
19817086 |
accttccaacaaatgcttttcgggctagtagacatttaacctcagattcatcatgca-agagatgtggagctaatattgagtcacttcttcacaccttta |
19816988 |
T |
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| Q |
157 |
gagattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatttcaattc |
223 |
Q |
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| T |
19816987 |
gagattgccctctctcattggcgatctgggatgccttgttgttcaacaaagactcaaatttcaattc |
19816921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 26293052 - 26292843
Alignment:
| Q |
26 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtgga |
125 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||| ||||| ||| | || | ||||||||||||| ||||||||||| |||| |||||| |
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| T |
26293052 |
aagcattttatttggttggctatgcatggtaaccttccaacgaatgcatttcgagctggcaaacatttaacctcagattcatcatgca-agagatgtgga |
26292954 |
T |
|
| Q |
126 |
gctagtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatttcaattctt |
225 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
26292953 |
gctagtattgagtcacttcttcacacttttagagattgccctctctctttggcgatctgggatgacttgttattcaacaaagatacaaatttcaattctc |
26292854 |
T |
|
| Q |
226 |
atgatttcaat |
236 |
Q |
| |
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| ||||||||| |
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|
| T |
26292853 |
aggatttcaat |
26292843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 236
Target Start/End: Original strand, 7022200 - 7022319
Alignment:
| Q |
120 |
tgtggagctagtattaagtcact---tcttcacacctttagagattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatt |
216 |
Q |
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||||||||||||||| ||||||| ||||||||| |||||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||||||||||| |
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| T |
7022200 |
tgtggagctagtattgagtcactacttcttcacacttttagagattgccctctctctttggcgatctgcgatgccttgtttttcaacaaagatacaaatt |
7022299 |
T |
|
| Q |
217 |
tcaattcttatgatttcaat |
236 |
Q |
| |
|
|||||||| | ||||||||| |
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| T |
7022300 |
tcaattctcaggatttcaat |
7022319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 7021742 - 7021828
Alignment:
| Q |
26 |
aagcattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgc |
112 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||| ||||| ||| || | |||||||||||||||| ||||||||||| |
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| T |
7021742 |
aagcattttatttggttggctatgcatggtaaccttccaacgaatgcatttcgggctgatagacatttaacctcagattcatcatgc |
7021828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 54874672 - 54874865
Alignment:
| Q |
29 |
cattttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagct |
128 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||| ||| | ||| || ||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
54874672 |
cattttatttggttggctgtgcatggtaaccttccaacgaattcttttcgggctagtagacatttaacctcagattcatcatgca-agagatgtggagct |
54874770 |
T |
|
| Q |
129 |
agtattaagtcacttcttcacacctttagagattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatttcaattc |
223 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54874771 |
aatattgagtcacttcttcacacctttagagattgccctctctcattggcgatctgggatgccttgttgttcaacaaagattcaaatttcaattc |
54874865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 236
Target Start/End: Complemental strand, 15918023 - 15917819
Alignment:
| Q |
32 |
tttatttggttgtctatgcattgtaaccttccaacaaatgccttttaggtgggtagacatttaacctcatattcatcatgccgagaggtgtggagctagt |
131 |
Q |
| |
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||||||| |||| |||||||| ||||||||||||| ||||| ||| | ||||| ||||||||| ||||||||||||| |||| |||||| ||||| |
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| T |
15918023 |
tttattttgttggctatgcatggtaaccttccaacgaatgcatttagtgctagtagatatttaaccttatattcatcatgca-agagatgtggatctagt |
15917925 |
T |
|
| Q |
132 |
attaagtcacttcttcacacctttag-agattgcccactctcattggagatttgggatgccttgttgttcaacaaagatacaaatttcaattcttatgat |
230 |
Q |
| |
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||| |||||||| ||||||||||| | || || || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
15917924 |
attgagtcactttttcacaccttttggagttttccatctctcattggcgatctgggatgccttgttgttcaacaaagatacaaatttcaattctcaagat |
15917825 |
T |
|
| Q |
231 |
ttcaat |
236 |
Q |
| |
|
|||||| |
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|
| T |
15917824 |
ttcaat |
15917819 |
T |
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