View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14105_high_15 (Length: 230)

Name: NF14105_high_15
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14105_high_15
NF14105_high_15
[»] chr1 (13 HSPs)
chr1 (19-230)||(33987885-33988094)
chr1 (195-230)||(14654423-14654458)
chr1 (195-230)||(14664214-14664249)
chr1 (195-230)||(14669792-14669827)
chr1 (195-230)||(14706077-14706112)
chr1 (195-230)||(14708567-14708602)
chr1 (195-230)||(14716280-14716315)
chr1 (197-230)||(28366282-28366315)
chr1 (199-230)||(14676625-14676656)
chr1 (199-230)||(14683743-14683774)
chr1 (199-230)||(38175613-38175644)
chr1 (196-230)||(14674471-14674505)
chr1 (196-230)||(14679849-14679883)
[»] chr2 (19 HSPs)
chr2 (44-229)||(8988290-8988478)
chr2 (104-230)||(9020744-9020871)
chr2 (96-230)||(9026675-9026810)
chr2 (90-230)||(8973195-8973336)
chr2 (102-230)||(8984588-8984717)
chr2 (17-186)||(8996171-8996339)
chr2 (96-228)||(9031942-9032075)
chr2 (77-230)||(9023319-9023471)
chr2 (45-230)||(9016334-9016517)
chr2 (77-230)||(8992018-8992172)
chr2 (81-230)||(9030274-9030422)
chr2 (122-230)||(8979237-8979346)
chr2 (96-230)||(8975584-8975719)
chr2 (95-151)||(9007956-9008012)
chr2 (131-230)||(2841100-2841201)
chr2 (21-86)||(9020679-9020740)
chr2 (195-230)||(30731997-30732032)
chr2 (199-230)||(43850042-43850073)
chr2 (200-230)||(32918074-32918104)
[»] chr4 (5 HSPs)
chr4 (131-230)||(3461225-3461325)
chr4 (131-230)||(11652475-11652575)
chr4 (197-230)||(50077282-50077315)
chr4 (198-230)||(49106612-49106644)
chr4 (199-230)||(49108716-49108747)
[»] chr8 (6 HSPs)
chr8 (131-230)||(41841235-41841335)
chr8 (131-230)||(42555166-42555266)
chr8 (130-227)||(42091944-42092042)
chr8 (199-230)||(42872533-42872564)
chr8 (200-230)||(44878977-44879007)
chr8 (200-230)||(44880914-44880944)
[»] chr5 (1 HSPs)
chr5 (131-230)||(1716535-1716634)
[»] chr6 (2 HSPs)
chr6 (197-230)||(10791735-10791768)
chr6 (197-230)||(10795973-10796006)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 33987885 - 33988094
Alignment:
Q  19 ctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagcaagtgttaggaagagagtttaccaagcaa- 117  Q
    ||||||||||||||||||||||||    |||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||     
T  33987885 ctatgtgtatgtatctactctgat----tgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaacatgcaac 33987980  T
Q  118 gctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttc 216  Q
     || ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||  ||||||||||||||||||||||    
T  33987981 cctgtttcaaaaaagtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttc 33988080  T
Q  217 tcggccttttggct 230  Q
    ||||||||||||||    
T  33988081 tcggccttttggct 33988094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 14654458 - 14654423
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14654458 catctttcaactcatacctttctcggccttttggct 14654423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 14664249 - 14664214
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14664249 catctttcaactcatacctttctcggccttttggct 14664214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 14669827 - 14669792
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14669827 catctttcaactcatacctttctcggccttttggct 14669792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 14706077 - 14706112
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14706077 catctttcaactcatacctttctcggccttttggct 14706112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 14708567 - 14708602
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14708567 catctttcaactcatacctttctcggccttttggct 14708602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 14716280 - 14716315
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  14716280 catctttcaactcatacctttctcggccttttggct 14716315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 28366315 - 28366282
Alignment:
Q  197 tctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||    
T  28366315 tctttcaactcatacctttctcggccttttggct 28366282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 14676625 - 14676656
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  14676625 tttcaactcatacctttctcggccttttggct 14676656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 14683743 - 14683774
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  14683743 tttcaactcatacctttctcggccttttggct 14683774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 38175644 - 38175613
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  38175644 tttcaactcatacctttctcggccttttggct 38175613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 14674471 - 14674505
Alignment:
Q  196 atctttcaactcatacctttctcggccttttggct 230  Q
    ||||| |||||||||||||||||||||||||||||    
T  14674471 atcttccaactcatacctttctcggccttttggct 14674505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 14679849 - 14679883
Alignment:
Q  196 atctttcaactcatacctttctcggccttttggct 230  Q
    ||||| |||||||||||||||||||||||||||||    
T  14679849 atcttccaactcatacctttctcggccttttggct 14679883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 8988290 - 8988478
Alignment:
Q  44 gattgatgacaatgtattaagaataaagaaaacaaaggaggaagcaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatc 141  Q
    ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||  |||||| |||| ||||||||||| | |||||||| |||||||||||    
T  8988290 gattgatgataatgttttaagaataaggaaaacaaaggaggaagaaagtgttttaggaagtgagtctaccaagcaagttgtttcaaaatagtcccacatc 8988389  T
Q  142 ggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |  |||||| |||||||||||| |||||||||||||||||| ||||||||||  |||||||||||| ||||| |||| |||||||||||    
T  8988390 gactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttggc 8988478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 104 - 230
Target Start/End: Original strand, 9020744 - 9020871
Alignment:
Q  104 agtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttc 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||||    
T  9020744 agtttaccaagcaagctatttcaaaaaagtcctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttc 9020843  T
Q  203 aactcatacctttctcggccttttggct 230  Q
    || |||||| ||||||||||||||||||    
T  9020844 aattcatacatttctcggccttttggct 9020871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 9026675 - 9026810
Alignment:
Q  96 aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaa 194  Q
    ||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||       
T  9026675 aggaagaaagtctaccaagcaagctgtttcaaaaaagtcccatatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaatt 9026774  T
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  9026775 catctttcaactcatacctttctcggccttttggct 9026810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 8973195 - 8973336
Alignment:
Q  90 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 188  Q
    ||||||||||||||||| |||||||||| || |||||||||||| |||||||| || |||  ||||| |||||| |||||||||||||||||| ||||||    
T  8973195 agtgttaggaagagagtctaccaagcaaactgtttcaaaaaagttccacatcgattattccagaaagtaagtgaagggatgtgatatataaaagcataag 8973294  T
Q  189 cgagaacatctttcaactcatacctttctcggccttttggct 230  Q
    ||||  ||||||||||||||||||||||||||||||||||||    
T  8973295 cgagttcatctttcaactcatacctttctcggccttttggct 8973336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 8984588 - 8984717
Alignment:
Q  102 agagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctt 200  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||  ||| ||    
T  8984588 agagtctaccaaacaagctatttcaaaaaagtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatt 8984687  T
Q  201 tcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||    
T  8984688 tcaactcatacctttctcggccttttggct 8984717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 8996171 - 8996339
Alignment:
Q  17 gcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagcaagtg--ttaggaagagagtttaccaag 114  Q
    |||||||| |||||||||||| ||||    |||||| ||||| |||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||    
T  8996171 gcctatgtttatgtatctactatgat----tgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttttaggaagagagtctaccaag 8996266  T
Q  115 caagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccata 186  Q
    |||| | |||||||| ||||||||||||  |||||| |||||||| || ||||||||||||||||||| ||||    
T  8996267 caagttgtttcaaaatagtcccacatcgactgttcaagaaagcaactgaagggatgtgatatataaaagcata 8996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 9031942 - 9032075
Alignment:
Q  96 aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaa 194  Q
    ||||||| ||| ||||||||||||| ||||||||||||| || |||| ||||||| |||||||||||| |||||||| ||||||||| |||||||||       
T  9031942 aggaagaaagtctaccaagcaagctgtttcaaaaaagtctcatatcgattgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaatt 9032041  T
Q  195 catctttcaactcatacctttctcggccttttgg 228  Q
    ||||||||||||||||||||||||||||||||||    
T  9032042 catctttcaactcatacctttctcggccttttgg 9032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 9023319 - 9023471
Alignment:
Q  77 aaaggaggaagcaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtgagg-gatgtgat 173  Q
    ||||||||||| |||||||  ||||||||||| ||||||||||    ||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||    
T  9023319 aaaggaggaagaaagtgttttaggaagagagtctaccaagcaa----ttcaaaaaaagtcccacatcggttgttcaagaaatcaagtgaagagatgtgat 9023414  T
Q  174 atataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 230  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggct 9023471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 45 - 230
Target Start/End: Original strand, 9016334 - 9016517
Alignment:
Q  45 attgatgacaatgtattaagaataaagaaaacaaaggaggaagcaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggt 144  Q
    |||||||| ||||| ||||||||||||||| ||||| || | | |||||||||||||||| |  |||||||| ||| ||||||| | |||||||||| ||    
T  9016334 attgatgataatgttttaagaataaagaaa-caaagtagaacgaaagtgttaggaagagact--accaagcatgctgtttcaaagatgtcccacatcagt 9016430  T
Q  145 tgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 230  Q
    |||||| ||||||||||||  ||||||||||||||||| ||||||||||  ||||||| ||||||||||||  ||| ||||||||||    
T  9016431 tgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggct 9016517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 8992018 - 8992172
Alignment:
Q  77 aaaggaggaagcaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtg-agggatgtgatat 175  Q
    ||||||| |||  ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| |||| ||||| ||||| |||||||||||||    
T  8992018 aaaggagaaagagagtgttaggaagagagtctaccaagcaaactgtttcaaaaaagtcccacattggttattcaagaaagtaagtgaagggatgtgatat 8992117  T
Q  176 ataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 230  Q
    |||||| ||||||||||  | ||||| ||||||| |||||||| | |||||||||    
T  8992118 ataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggct 8992172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 230
Target Start/End: Original strand, 9030274 - 9030422
Alignment:
Q  81 gaggaagcaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataa 179  Q
    ||||||| |||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||| ||| |||||||| ||||||||||||||||    
T  9030274 gaggaagaaagtgttaggaagag--tctaccaagcaagctgtttcaagaaagtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataa 9030371  T
Q  180 aaccataagcgagaacatctttcaactcatacctttctcggccttttggct 230  Q
    || ||||||| ||  ||||||||||||||||  ||||| ||||||||||||    
T  9030372 aagcataagcaagttcatctttcaactcatatttttcttggccttttggct 9030422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 8979237 - 8979346
Alignment:
Q  122 tttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcgg 220  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  8979237 tttcaaaaaagtcccacattggttgttcaaggaatcaagtgaagggacttgatatataaaagcataagcaagttcatctttcaactcatacctttctcgg 8979336  T
Q  221 ccttttggct 230  Q
    ||||||||||    
T  8979337 ccttttggct 8979346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 8975584 - 8975719
Alignment:
Q  96 aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaa 194  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||   |||| | |||| ||||||| |||||||||||||||||| ||||||||||      
T  8975584 aggaagagagtttaccaagcaagttgtttcaaaaaagtcccccatcaactgtttaagaaatcaagtgaagggatgtgatatataaaagcataagcgagtc 8975683  T
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    || |||||||||||||  |||||  |||||||||||    
T  8975684 caactttcaactcatatttttctaagccttttggct 8975719  T

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Target: chr2; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 9007956 - 9008012
Alignment:
Q  95 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007956 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 9008012  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 2841201 - 2841100
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttca-actcatacctttctcggccttttgg 228  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |||||||| || | |||||  | | ||| |  ||||||||||||||||||||||||    
T  2841201 agtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttgg 2841102  T
Q  229 ct 230  Q
    ||    
T  2841101 ct 2841100  T

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Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 9020679 - 9020740
Alignment:
Q  21 atgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaa 86  Q
    ||||||||||||||||| ||||    |||||| ||||| |||||||||||||||||||||||||||    
T  9020679 atgtgtatgtatctactttgat----tgatgataatgttttaagaataaagaaaacaaaggaggaa 9020740  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 30731997 - 30732032
Alignment:
Q  195 catctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  30731997 catctttcaactcatacctttctcggccttttggct 30732032  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 43850042 - 43850073
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  43850042 tttcaactcatacctttctcggccttttggct 43850073  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 32918074 - 32918104
Alignment:
Q  200 ttcaactcatacctttctcggccttttggct 230  Q
    |||||||||||||||||||||||||||||||    
T  32918074 ttcaactcatacctttctcggccttttggct 32918104  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 3461325 - 3461225
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |||||||||||| ||||  | ||||||||||||| ||||| || ||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  3461325 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggc 3461226  T
Q  230 t 230  Q
    |    
T  3461225 t 3461225  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 11652575 - 11652475
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| ||||||||||| |||| |   ||||||| |||||||||||||||||||||||||||    
T  11652575 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggc 11652476  T
Q  230 t 230  Q
    |    
T  11652475 t 11652475  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 50077315 - 50077282
Alignment:
Q  197 tctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||    
T  50077315 tctttcaactcatacctttctcggccttttggct 50077282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 49106644 - 49106612
Alignment:
Q  198 ctttcaactcatacctttctcggccttttggct 230  Q
    |||||||||||||||||||||||||||||||||    
T  49106644 ctttcaactcatacctttctcggccttttggct 49106612  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 49108747 - 49108716
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  49108747 tttcaactcatacctttctcggccttttggct 49108716  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 41841335 - 41841235
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| |||||||| || |||| |   |||||||||||||||||||||||||||||||||||    
T  41841335 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggc 41841236  T
Q  230 t 230  Q
    |    
T  41841235 t 41841235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 42555266 - 42555166
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |||||||||||| | ||| | ||||||||||||| |||||||||||||||||||  |||  ||  || |||||||||||||||||||| |  ||||||||    
T  42555266 agtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttggc 42555167  T
Q  230 t 230  Q
    |    
T  42555166 t 42555166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 42091944 - 42092042
Alignment:
Q  130 aagtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttg 227  Q
    ||||||||||||||| ||||| |||||||| |||| |||  ||| ||||||||||| |||| |   ||||||| |||||||||||||||  ||||||||    
T  42091944 aagtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg 42092042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 42872564 - 42872533
Alignment:
Q  199 tttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggct 42872533  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Original strand, 44878977 - 44879007
Alignment:
Q  200 ttcaactcatacctttctcggccttttggct 230  Q
    |||||||||||||||||||||||||||||||    
T  44878977 ttcaactcatacctttctcggccttttggct 44879007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Complemental strand, 44880944 - 44880914
Alignment:
Q  200 ttcaactcatacctttctcggccttttggct 230  Q
    |||||||||||||||||||||||||||||||    
T  44880944 ttcaactcatacctttctcggccttttggct 44880914  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 230
Target Start/End: Complemental strand, 1716634 - 1716535
Alignment:
Q  131 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 229  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||  | |||||||  ||||||| |||||||||||||||||||||||||||    
T  1716634 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 1716536  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 10791768 - 10791735
Alignment:
Q  197 tctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||    
T  10791768 tctttcaactcatacctttctcggccttttggct 10791735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 10796006 - 10795973
Alignment:
Q  197 tctttcaactcatacctttctcggccttttggct 230  Q
    ||||||||||||||||||||||||||||||||||    
T  10796006 tctttcaactcatacctttctcggccttttggct 10795973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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