View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_high_9 (Length: 307)
Name: NF14105_high_9
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_high_9 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 30760067 - 30759794
Alignment:
| Q |
17 |
cagagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
116 |
Q |
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| T |
30760067 |
cagagatttgtggacctttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
30759968 |
T |
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| Q |
117 |
gagtttcatatcaaattaatcatttgtaattgaaactactctaatttaatacccataagtgaagattgcaataggaagataaaaaggaacaactacttgc |
216 |
Q |
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| T |
30759967 |
gagtttcatatcaaattaatcatttgtaactgaaactactctaatttattacccataagtgaagatttcaataggaagataaaaaggaacaactacttgc |
30759868 |
T |
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| Q |
217 |
aacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgactt |
290 |
Q |
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| T |
30759867 |
aatgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacatgactt |
30759794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 186 - 290
Target Start/End: Complemental strand, 30749643 - 30749539
Alignment:
| Q |
186 |
aataggaagataaaaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatatcgacagtggtgccacacaccacat |
285 |
Q |
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| T |
30749643 |
aataggaagagaaaaaggaacaactacttgcaatgtcaggtcttacaaccaaaataccctcaaacttttggtatatcgacagtggtgccacacaccacat |
30749544 |
T |
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| Q |
286 |
gactt |
290 |
Q |
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||||| |
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| T |
30749543 |
gactt |
30749539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 30749805 - 30749733
Alignment:
| Q |
19 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgt |
93 |
Q |
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| T |
30749805 |
gagatttgtggacctttggtgcaccttggagagag--ttctcacaagcgttcaaagttatgatcatctagggtgt |
30749733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 30749708 - 30749641
Alignment:
| Q |
94 |
atcttggctcaggactttactttgagtttcatatcaaattaatcatttgtaattgaaactactctaat |
161 |
Q |
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| T |
30749708 |
atcttggcttaggaatttactttgagttgcataacaaattaataatttgtaactgaaactactctaat |
30749641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 29823486 - 29823563
Alignment:
| Q |
19 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
98 |
Q |
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| T |
29823486 |
gagatatgtggacctttggtgcgccttggtgagat--ttctcacaagtgtccaaagttatgaccagctagggtgtgtctt |
29823563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 1608070 - 1608023
Alignment:
| Q |
51 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
98 |
Q |
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| T |
1608070 |
gagagttctcgcaagcgtccaaagttatgaccagctagggtgtgtctt |
1608023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 20536685 - 20536638
Alignment:
| Q |
51 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
98 |
Q |
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| T |
20536685 |
gagagttctcgcaagcgtccaaagttatgaccaactagggtgtgtctt |
20536638 |
T |
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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 58226 - 58173
Alignment:
| Q |
25 |
tgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatga |
80 |
Q |
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| T |
58226 |
tgtggaccttgggtgcacctt--agtgagagttctcgcaagcgtccaaagttatga |
58173 |
T |
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