View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_10 (Length: 350)
Name: NF14105_low_10
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 47686250 - 47685917
Alignment:
| Q |
17 |
actacttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaata |
116 |
Q |
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| T |
47686250 |
actacttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaata |
47686151 |
T |
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| Q |
117 |
agtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatacttacttgttttagtttccatgacaccaaaaattgaatcatttgaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47686150 |
agtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatacttacttgttttagtttccatgataccaaaaattgaatcatttgaat |
47686051 |
T |
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| Q |
217 |
aacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatcgatctgtcagaagggttgcagattttttcaaacaaccacgacactc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47686050 |
aacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatcgatctgtcagaagggttgcagattttttcaaacaaccgcgacactc |
47685951 |
T |
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| Q |
317 |
ctcttgattaatgtctcctctacaaaagcctatt |
350 |
Q |
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| T |
47685950 |
ctcttgattaatgtctcctctacaaaagcctatt |
47685917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 47674136 - 47673810
Alignment:
| Q |
17 |
actacttgattcattcattactttcacactcttttcagcaaacttcttacgcgaatcaccatcaatggccacacttttaagttcatccaacaaatcaata |
116 |
Q |
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| T |
47674136 |
actacttgattcatcaattactttcacactcttttcagcaaacttcttacgcgaatcaccatcagcggccacggttttaagttcatccaacaaatcaaga |
47674037 |
T |
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| Q |
117 |
agtgtctgattaaatgcatcattccctactgttttgccttccatatcgaaatacttacttgttttagtttccatgacaccaaaaattgaatcatttgaat |
216 |
Q |
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||||| |||||||||||||||| | | ||| || ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47674036 |
agtgtttgattaaatgcatcatccgcccttgtattagctttgatattgaaataattacttgttttagtttccatgacaccaaaaattgaatcatttgaat |
47673937 |
T |
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| Q |
217 |
aacgtaagatacacaagtcatagtaaccaattgcttctttttgttctccacatcgatctgtcagaagggttgcagattttttcaaacaaccacgacactc |
316 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||||| || || ||| |||||||||||| ||||| || |
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| T |
47673936 |
aacgtaaactacacaagtcgaagtaaccaattgcttctttttgtattccacatcgatccacgagaagtgtagccgatgatttcaaacaaccgcgacattc |
47673837 |
T |
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| Q |
317 |
ctcttgattaatgtctcctctacaaaa |
343 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
47673836 |
ctctggattaatgtctcctctacaaaa |
47673810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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