View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_11 (Length: 349)
Name: NF14105_low_11
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 185 - 349
Target Start/End: Original strand, 41328742 - 41328903
Alignment:
| Q |
185 |
catgtctttttcatgattcatgaactgctgatgatttattcaatgactcgtacatacattaactaattcattggtacgaactagctgatgtgaattaatt |
284 |
Q |
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| T |
41328742 |
catgtctttttcatgattcatgaactgctgat---ttattcattgactcgtacatacattaactaattcattggtacgaactagttgatgtgaattaatt |
41328838 |
T |
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| Q |
285 |
agtttcgtcctaatgttacaatgaaaatgaactgtgtggagaagagaagaagatggtacaaatat |
349 |
Q |
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| T |
41328839 |
agtttcgtcctaatgttacaatgaaaatgaactgtgtggagaagagaagaagatggtacaaatat |
41328903 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 41328620 - 41328652
Alignment:
| Q |
64 |
tggtatttaggagaatcaaacctaagaccttaa |
96 |
Q |
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| T |
41328620 |
tggtatttaggagaatcaaacctaagaccttaa |
41328652 |
T |
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