View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14105_low_17 (Length: 274)
Name: NF14105_low_17
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 241
Target Start/End: Original strand, 8978959 - 8979187
Alignment:
| Q |
15 |
agttttcactttccctttgaaacctcaaatatctaggtgcatatgtctgtactataatctgaaaattatgcattattgatcagct--ttatcttcaattc |
112 |
Q |
| |
|
||||||||||||| |||||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||| | | || ||||||| ||||| |
|
|
| T |
8978959 |
agttttcactttcactttgaaagctgaaatttctaggtgcatatgcctgtactataatctgaaaattatgcattattaagaacctgtttatctttaattc |
8979058 |
T |
|
| Q |
113 |
ttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttgattttttcgaga |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8979059 |
ttcaactttagttttacctatgcattaatggccattaccattgccactcaactgttatttaatgtctgcatatgatgttgcagacttgattttttcgaga |
8979158 |
T |
|
| Q |
213 |
actggtgcaagtgcaatgacttgttatga |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||| |
|
|
| T |
8979159 |
actggtgcaaatgcaatgacttgttatga |
8979187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 8973836 - 8974021
Alignment:
| Q |
15 |
agttttcactttccctttgaaacctcaaatatctaggtgcatatgtctgtactataatctgaaaattatgcattattgatcagct--ttatcttcaattc |
112 |
Q |
| |
|
||||||||||||| || ||||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| | || |||||||||| || |
|
|
| T |
8973836 |
agttttcactttcactctgaaacctcgaatttctaggtgcatatgtctgtcctata---tgaaaattatgcattattaagagcctggttatcttcaactc |
8973932 |
T |
|
| Q |
113 |
ttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
201 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||| || ||| || ||| | |||||||| |||||||| ||||||||||| |
|
|
| T |
8973933 |
ttcaactttagttttacctttgcattaatggccgctaccattaccactccaccgttttctaatgtctgtatatgatgctgcagacttga |
8974021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 8995549 - 8995648
Alignment:
| Q |
102 |
atcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| |||||| || |||||| ||| | |||| || |||||||| ||||||||||| |
|
|
| T |
8995549 |
atcttcaattcttcaactttagttttatctatgcattaatggccactaccatcaccactcaaccgttttctaatttcagtatatgatgctgcagacttga |
8995648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 201
Target Start/End: Original strand, 9015963 - 9016062
Alignment:
| Q |
102 |
atcttcaattcttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
201 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| ||||||| ||||||| || ||| || ||| | |||| ||||||||||||| ||||||||||| |
|
|
| T |
9015963 |
atctacaattcttcaactttagtcttacctatgcatgaatggccgataccattaccactccaccgttttctaatatctacatatgatgctgcagacttga |
9016062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 8995436 - 8995509
Alignment:
| Q |
15 |
agttttcactttccctttgaaacctcaaatatctaggtgcatatgtctgtactataatctgaaaattatgcatt |
88 |
Q |
| |
|
||||||| ||||| |||||||||||||||| || | ||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8995436 |
agttttccctttcactttgaaacctcaaatttccatgtgcatatgtctgtactataacatgcaaattatgcatt |
8995509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 8984322 - 8984399
Alignment:
| Q |
15 |
agttttcactttccctttgaaacctcaaatatctaggtgcat-atgtctgtactataatctgaaaattatgcattatt |
91 |
Q |
| |
|
|||||||||| || |||||||||||||||| || | |||||| |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
8984322 |
agttttcactatcactttgaaacctcaaatttccatgtgcattatgtctgtacaataatatgcaaattatgcattatt |
8984399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 9019988 - 9020076
Alignment:
| Q |
113 |
ttcaactttagttttacctatccattaatggccattaccattgccgctcaactgttatttaatgtctacatatgatgttgcagacttga |
201 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||| || ||| || ||| | |||||||| ||||||||| |||| |||||| |
|
|
| T |
9019988 |
ttcaactttagttttacctttgcattaatggccgctaccattaccactccaccgttttctaatgtctgcatatgatgctgcatacttga |
9020076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 8972980 - 8973024
Alignment:
| Q |
197 |
cttgattttttcgagaactggtgcaagtgcaatgacttgttatga |
241 |
Q |
| |
|
||||||| |||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
8972980 |
cttgattgtttctagaaatggtgcaagtgcagtgacttgttatga |
8973024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 14686177 - 14686252
Alignment:
| Q |
15 |
agttttcactttccctttgaaacctcaaatatctaggtgcatatgtctgtactataatctgaaaattatgcattatt |
91 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||| |||| |||| || || ||||||||||| |
|
|
| T |
14686177 |
agttttcactttcactttgaaacctcaaat-tctatgtgcatatgtctctactctaatatgcaagctatgcattatt |
14686252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University