View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_18 (Length: 265)
Name: NF14105_low_18
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 48353306 - 48353559
Alignment:
| Q |
12 |
agcaaaggatcggagagaagtagcttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagag |
111 |
Q |
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| T |
48353306 |
agcaaaggatcggagagaagtagcttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagag |
48353405 |
T |
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| Q |
112 |
gaaagtatgtttccatgtacaagcgcgatccacatgaaaaccctgccattgtatgttctactaattcattgcctactatttaattacactcattcactct |
211 |
Q |
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| T |
48353406 |
gaaagtatgtttccatgtacaagcgcgatcctcatgaaaaccctgccattgtatgttctactaattcattgcctactatttaattacactcattcactct |
48353505 |
T |
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| Q |
212 |
aaactctaattactgcaccgattaatgcttgcatttctgctttacttcttaatt |
265 |
Q |
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| T |
48353506 |
aaactctaattactgcacctattaatgttttcatttctgctttacttcttaatt |
48353559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 21926292 - 21926423
Alignment:
| Q |
36 |
ttcggttgggtatatcacttaggagtgaattccattggtcatcaatattgtcatcttcgatttcttttgatcagaggaaagtatgtttccatgtacaagc |
135 |
Q |
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||||||||||| |||||| | || |||||||| ||||||||| |||||||||| ||||| ||||| || || ||||| || | |||||| |||||||| | |
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| T |
21926292 |
ttcggttgggtttatcaccttggggtgaattctattggtcatgaatattgtcaccttcgttttctcttcattagaggcaaatgtgtttctatgtacaaac |
21926391 |
T |
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| Q |
136 |
gcgatccacatgaaaaccctgccattgtatgt |
167 |
Q |
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| T |
21926392 |
gtgatcctcatcagaatcctggcattgtatgt |
21926423 |
T |
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