View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14105_low_2 (Length: 511)
Name: NF14105_low_2
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 37809519 - 37809055
Alignment:
| Q |
10 |
ataggtgcaacgagaatggagaggagcttagcgtgaaatcaagttattcaagtctttgaaagcccatttcaattgtgtcccaaattgaaggattattgtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37809519 |
ataggtgcaacgagaatggagaggagcttagcgtgaaatcaagttattcaagtctttgaaagcccat-------gtgtcccaaattgaaggattattgtt |
37809427 |
T |
|
| Q |
110 |
actggtcttcaggtgatagagctcggattaaagtagcattgcaaaatactgcaattattgtggtagtatagtggaagacaatgctaagagattgtcctat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809426 |
actggtcttcaggtgatagagctcggattaaagtagcattgcaaaatactgcaattattgtggtagtatagtggaagacaatgctaagagattgtcctat |
37809327 |
T |
|
| Q |
210 |
tggtatgtctctttggttgaatgtgatttctcttaatatgagtaataatgatgttaaagtggaatagcaagatgtttatggaagggtttttgggctgttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809326 |
tggtatgtctctttggttgaatgtgatttctcttaatatgagtaataatgatgttaaagtggaatagcaagatgtttatggaagggtttttgggctgttt |
37809227 |
T |
|
| Q |
310 |
atggtatttgaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctttagttattcttggtttgccaatggatgataa |
409 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809226 |
atggtattggaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctttagttattcttggtttgccaatggatgataa |
37809127 |
T |
|
| Q |
410 |
tgtttgttattaggagtctttgtcacttgtcaggagcttatgttataggaatttttgttcttcaattgattc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37809126 |
tgtttgttattaggagtctttgtcacttgtcaggagcttatgttataggaatttttgttcttcaattgattc |
37809055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 378
Target Start/End: Complemental strand, 2809144 - 2809065
Alignment:
| Q |
298 |
tttgggctgtttatggtatttgaggaatatgataacactttttggaggccaaagttttcagctcttcatatcatgaagctt |
378 |
Q |
| |
|
|||||| ||||||||||||| ||| | ||||||| || ||| |||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
2809144 |
tttgggatgtttatggtattggagtac-atgataatacatttcggaggctaaagttttcagctcttcatgtgatgaagctt |
2809065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University