View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_3 (Length: 488)
Name: NF14105_low_3
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 36920222 - 36919752
Alignment:
| Q |
17 |
ttatcatatatggcttgcagtgtcagaaaatataaaaagtaatgcgcaccattgtgagagtgctaacttttatcatatttaaaccaatgtcatatttgtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920222 |
ttatcatatatggcttgcagtgtcagaaaatataaaaagtaatgcgcaccattgtgagagtgctaacttttatcatatttaaaccaatgtcatatttgtc |
36920123 |
T |
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| Q |
117 |
agatcctatatgcaaatgcttcctccttgctataataataacttgtttatactcaatttcatatagtactgcacatgcacacttcttcctatacctgtac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36920122 |
agatcctatatgcaaatgcttcctccttgctataataataacttgtttatattcaatttcatatagtactgcacatgcacacttcttcctatacctgtac |
36920023 |
T |
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| Q |
217 |
agtagtacacacctctctttctctctcaactctcaacctcttatttgtcctcttatgtttatgttttcaatttttcttcaactatctagttgcattagct |
316 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36920022 |
agtagtacacacctctcattctctctcaactctcaacctcttatttgtcctcttatgtttatgttttcaatttttcttcaactatctagttgcattagtt |
36919923 |
T |
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| Q |
317 |
ttcaaagttggtgtttggagtgtgatagttgactgnnnnnnnnnnnnnntaaatatttgtactaatattgaagaaaatgatggtccaaagtatgaattta |
416 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36919922 |
ttcaaagttggtgtttggagtgtgatagttgactg-aaaaaaacaaaaataaatatttgtactaatattgaagaaaatgatggtccaaagtatgaattta |
36919824 |
T |
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| Q |
417 |
aagcattgagaatcccaattaagaggatagagatatgactatataggcttgtagctttctctctgctcctcc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
36919823 |
aagcattgagaatcccaattaagaggatagagatatgactatataggcttgtagctttctttctgttcctcc |
36919752 |
T |
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