View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_5 (Length: 419)
Name: NF14105_low_5
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 284 - 407
Target Start/End: Original strand, 8550773 - 8550896
Alignment:
| Q |
284 |
ctaagtagttgatggatgttcggaactattccaaaccccgtgcaatttgaaaattttgcaacttttctttatcattgttgactaatattgttataattta |
383 |
Q |
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| T |
8550773 |
ctaagtagttgatggatgttcggaactattccaaaccccgtgcaaattgaaaattttgcaacttttctttatcattgttgactaatattgttataattta |
8550872 |
T |
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| Q |
384 |
tttaggtgtgcaaagtataaattg |
407 |
Q |
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| T |
8550873 |
tttaggtgtgcaaagtataaattg |
8550896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 8550731 - 8550691
Alignment:
| Q |
164 |
cctatgtttggttcaacttctacttctcttaaaatcacggc |
204 |
Q |
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| T |
8550731 |
cctatgtttggttcaacttctacttctcttaaaatcacggc |
8550691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 8640755 - 8640704
Alignment:
| Q |
356 |
cattgttgactaatattgttataatttatttaggtgtgcaaagtataaattg |
407 |
Q |
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| T |
8640755 |
cattgttccctaatattgttttaatttatataggtgtgcaaagtttaaattg |
8640704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 367 - 408
Target Start/End: Complemental strand, 9002613 - 9002572
Alignment:
| Q |
367 |
aatattgttataatttatttaggtgtgcaaagtataaattga |
408 |
Q |
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| T |
9002613 |
aatattgttgtaatttatataggtgtgcaaagtttaaattga |
9002572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 1601066 - 1601106
Alignment:
| Q |
367 |
aatattgttataatttatttaggtgtgcaaagtataaattg |
407 |
Q |
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| T |
1601066 |
aatattgttttaatttatataggtgtgcaaagtttaaattg |
1601106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 8534764 - 8534724
Alignment:
| Q |
367 |
aatattgttataatttatttaggtgtgcaaagtataaattg |
407 |
Q |
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| T |
8534764 |
aatattgttttaatttatataggtgtgcaaagtttaaattg |
8534724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 43402971 - 43402937
Alignment:
| Q |
216 |
tgcactttgtagcttgtggaaatcacggctgaaac |
250 |
Q |
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| T |
43402971 |
tgcactttgtagcttgtggaaatcacggccgaaac |
43402937 |
T |
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