View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14105_low_8 (Length: 355)
Name: NF14105_low_8
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14105_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 11299371 - 11299706
Alignment:
| Q |
20 |
gacatcagtaccaatttctgattgtagttgttcttgtgccagcttctcaaacagttgcttgacagcttcagagtttccaaacatcatttcttcatcttct |
119 |
Q |
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| T |
11299371 |
gacatcagtaccaatttctgattgtagttgttcttgtgccagcttctcaaacaattgcttgacagcttcagagtttccaaacatcatttcttcatcttct |
11299470 |
T |
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| Q |
120 |
tcttcatctgatacaaaaccatccctttcatgatgatcatgttcaatgacactcccttgtctaaaatcattgttgtcaaattcaaccaaagacgcagagt |
219 |
Q |
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| T |
11299471 |
tcttcatctgatacaaaaccatccctttcatgatgatcatgttcaatgacactcccttgtctaaaatcattattgtcaaattcaaccaaagacgcagagt |
11299570 |
T |
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| Q |
220 |
ctcgaccaactgaaaatttaacatcacaaacaatcataattcataatcacacaacaactaaactactcattcaaagaaacacaaacactaagaccaacgt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11299571 |
ctcgaccaactgaaaatttaacatcacaaacaatcataattcataatcacacaacaactaaactactcattcaaagaaacacaaacactaagaccaacgt |
11299670 |
T |
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| Q |
320 |
tctaactaaatgcttttcattatattttacaatttt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
11299671 |
tctaactaaatgcttttcattatattttacaatttt |
11299706 |
T |
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