View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14105_low_9 (Length: 353)

Name: NF14105_low_9
Description: NF14105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14105_low_9
NF14105_low_9
[»] chr7 (15 HSPs)
chr7 (13-275)||(34344263-34344525)
chr7 (13-275)||(6909512-6909774)
chr7 (38-171)||(18670735-18670868)
chr7 (37-122)||(18767022-18767107)
chr7 (37-123)||(34458599-34458685)
chr7 (84-138)||(15747381-15747435)
chr7 (37-123)||(8771047-8771133)
chr7 (37-123)||(41801068-41801153)
chr7 (90-171)||(40017187-40017268)
chr7 (52-125)||(5021028-5021101)
chr7 (52-153)||(9975416-9975517)
chr7 (44-155)||(38780698-38780809)
chr7 (52-125)||(37724341-37724415)
chr7 (188-275)||(34458749-34458834)
chr7 (201-234)||(38780856-38780889)
[»] chr5 (15 HSPs)
chr5 (13-275)||(29094923-29095187)
chr5 (31-234)||(6865957-6866160)
chr5 (117-275)||(29454057-29454224)
chr5 (37-123)||(19182274-19182360)
chr5 (13-134)||(13836712-13836835)
chr5 (38-155)||(34311779-34311896)
chr5 (37-123)||(3168966-3169052)
chr5 (37-123)||(29736078-29736164)
chr5 (53-122)||(11817404-11817473)
chr5 (37-123)||(12904529-12904615)
chr5 (37-122)||(38357081-38357166)
chr5 (59-122)||(2893802-2893865)
chr5 (165-275)||(13836847-13836960)
chr5 (52-125)||(35123162-35123235)
chr5 (188-275)||(2893653-2893738)
[»] chr3 (15 HSPs)
chr3 (18-275)||(38926247-38926502)
chr3 (28-158)||(18369387-18369518)
chr3 (45-155)||(36708466-36708576)
chr3 (38-155)||(15484225-15484342)
chr3 (31-275)||(42675873-42676114)
chr3 (52-155)||(9163585-9163688)
chr3 (37-120)||(20822938-20823021)
chr3 (36-155)||(26009623-26009742)
chr3 (37-113)||(45683799-45683875)
chr3 (52-125)||(19824251-19824324)
chr3 (44-154)||(54440561-54440671)
chr3 (28-133)||(9319567-9319672)
chr3 (29-155)||(45759467-45759593)
chr3 (17-122)||(28675350-28675455)
chr3 (90-122)||(17605316-17605348)
[»] chr6 (14 HSPs)
chr6 (13-275)||(23066467-23066728)
chr6 (13-275)||(31297561-31297827)
chr6 (38-158)||(9564945-9565065)
chr6 (37-123)||(24378390-24378476)
chr6 (84-138)||(1568876-1568930)
chr6 (37-123)||(6004581-6004667)
chr6 (37-123)||(6008111-6008197)
chr6 (37-123)||(26010485-26010571)
chr6 (38-142)||(9051082-9051186)
chr6 (44-153)||(10008688-10008797)
chr6 (52-125)||(33804392-33804465)
chr6 (37-123)||(21548461-21548547)
chr6 (52-155)||(24749229-24749332)
chr6 (197-275)||(11454550-11454628)
[»] chr2 (11 HSPs)
chr2 (13-274)||(35487307-35487568)
chr2 (37-275)||(8066667-8066905)
chr2 (154-275)||(36069506-36069629)
chr2 (37-123)||(37643111-37643197)
chr2 (37-123)||(16212798-16212884)
chr2 (37-123)||(33912986-33913072)
chr2 (37-123)||(28400991-28401077)
chr2 (13-133)||(21614230-21614350)
chr2 (38-156)||(36803492-36803610)
chr2 (46-124)||(43782480-43782558)
chr2 (44-128)||(31594162-31594246)
[»] chr8 (10 HSPs)
chr8 (30-275)||(40467287-40467532)
chr8 (30-223)||(23941830-23942023)
chr8 (37-122)||(44083453-44083538)
chr8 (178-275)||(23898344-23898441)
chr8 (67-155)||(15148052-15148140)
chr8 (13-234)||(27083115-27083338)
chr8 (29-133)||(43613497-43613601)
chr8 (160-272)||(44616197-44616308)
chr8 (94-155)||(8639328-8639389)
chr8 (46-153)||(6900479-6900586)
[»] chr1 (4 HSPs)
chr1 (38-234)||(34854082-34854276)
chr1 (29-155)||(37139559-37139685)
chr1 (52-125)||(16873948-16874021)
chr1 (57-125)||(44929847-44929915)
[»] chr4 (7 HSPs)
chr4 (38-171)||(50451645-50451777)
chr4 (37-123)||(26693540-26693626)
chr4 (37-155)||(55223232-55223350)
chr4 (37-123)||(46639431-46639517)
chr4 (144-272)||(3728465-3728592)
chr4 (52-125)||(20669097-20669170)
chr4 (52-153)||(42169475-42169576)
[»] scaffold0014 (1 HSPs)
scaffold0014 (38-155)||(72145-72262)
[»] scaffold0006 (1 HSPs)
scaffold0006 (52-122)||(41749-41819)
[»] scaffold0112 (1 HSPs)
scaffold0112 (44-170)||(16050-16174)
[»] scaffold0308 (1 HSPs)
scaffold0308 (52-125)||(16273-16346)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 34344525 - 34344263
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||| |||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  34344525 aatactgttacttctattcctcgcttgttagataaggtcaaattgttatatttagggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcaga 34344426  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcct 212  Q
    |||||||||||||||||||||||||| | | ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34344425 ggtggtggtcaagcccgttagaatgtctaggcattgactaacttgtgttttctctgttttagttattttctgacatcttgtaattttttagtggtcttct 34344326  T
Q  213 aggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    ||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  34344325 aggcacaccttgtgcttgggaaccgctgatggttgtggtaatataattccattttgatttctt 34344263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 6909774 - 6909512
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||| ||||||||||||||| || |||||| ||||| |||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||    
T  6909774 aataatgttacttctattccacgcttgttagataagatcaaattgttgtctttagggtggccgaaagctaaaaaggctgtgtttgtttacggtacgcaga 6909675  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttag-ttattttctgacatcttgtaattttttagtggtctcc 211  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| |||| | |||||||| || |||||||||||||| ||| |||||||||||||||    
T  6909674 ggtggtggtcaagcccgttagaatgtctgggcattggctaacttgtgttttttttgttttagttttttttctgacatcttataa-tttttagtggtctcc 6909576  T
Q  212 taggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    |||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  6909575 taggcacaccttgtgcttgggaaccgctgatggttgtggtaatataattccattttgatttctt 6909512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 18670868 - 18670735
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  18670868 tgttagataaggttaaattgttatctttagggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaaaccctttagaatg 18670769  T
Q  138 tttggacattggctaacttgtcttttctctgttt 171  Q
    | ||| |||||| |||||||| |  |||||||||    
T  18670768 tctgggcattggttaacttgtgtaatctctgttt 18670735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 18767107 - 18767022
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  18767107 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggctgtgtttgtttatggtacgcagagatggtggtc 18767022  T

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Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 34458599 - 34458685
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  34458599 ttgttaaataaggttaaattgttatcttttgggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 34458685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 15747381 - 15747435
Alignment:
Q  84 aaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15747381 aaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgt 15747435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 8771133 - 8771047
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||||| ||| ||||| |||||||||||||| |||||||||    
T  8771133 ttgttagataaagttaaattgttatctttggggtggctgaaagctaaaaaggttgtttttgtctatggtacgcagagatggtggtca 8771047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 41801153 - 41801068
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||| ||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  41801153 ttgttagataaggttaaattgttatattt-gggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 41801068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 40017268 - 40017187
Alignment:
Q  90 tgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttt 171  Q
    ||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||| ||||||||| |  |||||||||    
T  40017268 tgtgtttgtttatggtacgcagaggtggtggtcaagctctttagagtgtttgggcattgactaacttgtgtaatctctgttt 40017187  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 5021028 - 5021101
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| |||||||||||||||| |||||| ||  |||||||||||||||| |||| ||||||||||||    
T  5021028 aaattgttatcattagggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 5021101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 153
Target Start/End: Complemental strand, 9975517 - 9975416
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggct 151  Q
    ||||||||||||||| |||||||||||| || ||| |   ||||||||| || ||| ||||||||||||||||| || ||||  ||| ||||||||||||    
T  9975517 aaattgttatctttaaggtggctgaaagctagaaatgtcatgtttgtttttgatacacagaggtggtggtcaagtcctttagtttgtctggacattggct 9975418  T
Q  152 aa 153  Q
    ||    
T  9975417 aa 9975416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 38780698 - 38780809
Alignment:
Q  44 ataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttgga 143  Q
    ||||||| |||||||||||| |||||| |||||||| ||| || |   ||||||||| |||||| || |||||||||| || ||| ||||| |||||||     
T  38780698 ataaggttaaattgttatctctagggtcgctgaaagctaataatgtcatgtttgtttttggtactcataggtggtggttaaaccctttagattgtttggg 38780797  T
Q  144 cattggctaact 155  Q
    |||||| |||||    
T  38780798 cattgggtaact 38780809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 37724341 - 37724415
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggct-gtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| |||||||||||||||| ||||||  ||  |||||||||||||||| |||| ||||||||||||    
T  37724341 aaattgttatcattagggtggctgaaagctaaaaaaactcatgtttgtttatggtactcagatgtggtggtcaag 37724415  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 275
Target Start/End: Original strand, 34458749 - 34458834
Alignment:
Q  188 tcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    |||||||| |||| |||||| ||||||||||||||| || |||||||  |||| | | ||| || |||||||||||||||||||||||    
T  34458749 tcttgtaactttt-agtggtttcctaggcacaccttgtgcttgggaactgctgtttggtgt-gttatttaattccattttgatttctt 34458834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Original strand, 38780856 - 38780889
Alignment:
Q  201 tagtggtctcctaggcacaccttttgtttgggaa 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  38780856 tagtggtctcctaggcacaccttatgtttgggaa 38780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 29094923 - 29095187
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29094923 aatactgttacttctattccacgcttgttagataaggtcaaattgttatctttagggtggttgaaagttaaaaaggttgtgtttgtttatggtacgcaga 29095022  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcct 212  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||| |||||||||    
T  29095023 ggtggtggtcaagcccgttagaatgtctgggcattggctaacttgtattttctctgttttagtttttttctaacatcttataattttttattggtctcct 29095122  T
Q  213 aggcacaccttttgtttgggaatcgctgatggttgtgg--taatttaattccattttgatttctt 275  Q
    ||||||||||| || ||| ||| |||||||||||||||  |||| |||||| |||||||||||||    
T  29095123 aggcacaccttgtgcttgagaaccgctgatggttgtggtataatataattctattttgatttctt 29095187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 6866160 - 6865957
Alignment:
Q  31 cctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgt 130  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||| |||||| || ||| ||| |    
T  6866160 cctcgtctgttagataaggtcaaattgttatctttagggtggttgaaagctaaaaaggccatgtttgtttatggtacgcaaaggtggcggccaaaccctt 6866061  T
Q  131 tagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttg 230  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |   || |||||||||||||| ||| |||||||||||||||||||| || || |||    
T  6866060 tagattgtttggacattggctaacttgtgttttctctgttttattgtgttactgacatcttgtaactttatagtggtctcctaggcacacgttgtgcttg 6865961  T
Q  231 ggaa 234  Q
    ||||    
T  6865960 ggaa 6865957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 275
Target Start/End: Original strand, 29454057 - 29454224
Alignment:
Q  117 gtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttt---------tagttattttctgacatcttgtaattttttagtggt 207  Q
    ||||||||||||| |||| ||||||| ||||||||||||||| |||| |||||||         ||||||||||||||||||||||||||| ||||||||    
T  29454057 gtggtcaagcccgctagattgtttgggcattggctaacttgtgttttttctgttttctccgttttagttattttctgacatcttgtaatttgttagtggt 29454156  T
Q  208 ctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    ||||||  |||||||| || |||| ||  |||||| ||||||||||| |||||||||||||| |||||    
T  29454157 ctcctaaacacaccttatgcttggaaactgctgattgttgtggtaatataattccattttgacttctt 29454224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 19182274 - 19182360
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  19182274 ttgttaaataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtca 19182360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 13836712 - 13836835
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaa--aggctgtgtttgtttatggtacgca 110  Q
    |||| ||||||| ||  |||||| |||||| ||||||||||||||||||||||  |||||||||||| |||||  ||||  |||||||||||||||||||    
T  13836712 aatactgttactactgctcctcgcttgttagataaggtcaaattgttatctttgcggtggctgaaagctaaaaagaggcaatgtttgtttatggtacgca 13836811  T
Q  111 gaggtggtggtcaagcccgttaga 134  Q
    |||||||||||| ||| |||||||    
T  13836812 gaggtggtggtcgagctcgttaga 13836835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Complemental strand, 34311896 - 34311779
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||| ||||||||||||| |||||  | |||||||||||||||||||||||| |||||||||| ||| ||||  ||    
T  34311896 tgttagataaggttaaattgttatctttggggtggctgaaagataaaactgttgtgtttgtttatggtacgcagagatggtggtcaaaccctttagcttg 34311797  T
Q  138 tttggacattggctaact 155  Q
    ||| | | ||||||||||    
T  34311796 tttaggctttggctaact 34311779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 3168966 - 3169052
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| || ||||||    
T  3168966 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatgatggtca 3169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 29736078 - 29736164
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| ||||| |||||||| ||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  29736078 ttgttagataaggttaaattattatctttggggtgactgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtca 29736164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 11817473 - 11817404
Alignment:
Q  53 aattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  11817473 aattgttatctttggggtggctgaaagctaaaaaggctgtgtttgtttatggtacgctgagatggtggtc 11817404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 12904615 - 12904529
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| ||||||||||||  |||||| | |||||||||||||||||||||||| || ||||||    
T  12904615 ttgttagataaggttaaattgttatctttggggtggctgaaaactaaaaatgttgtgtttgtttatggtacgcagagatgatggtca 12904529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 122
Target Start/End: Complemental strand, 38357166 - 38357081
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    |||||| ||||||| |||||||||||||| |||||| |||||| |||||| | |||||||| ||||||||||||||| ||||||||    
T  38357166 ttgttagataaggttaaattgttatctttggggtggatgaaagctaaaaaagttgtgtttgcttatggtacgcagagatggtggtc 38357081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 2893865 - 2893802
Alignment:
Q  59 tatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    ||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||    
T  2893865 tatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtc 2893802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 275
Target Start/End: Original strand, 13836847 - 13836960
Alignment:
Q  165 tctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctga---tggttgtggtaatttaattc 261  Q
    |||||||||||   ||||||||||||||||| |||||||| ||||||||| |||||||| || |||||||   ||||   | |||||||| || |||||     
T  13836847 tctgttttagtatatttctgacatcttgtaactttttagtagtctcctagacacaccttgtgcttgggaactactgattgttgttgtggttatataattt 13836946  T
Q  262 cattttgatttctt 275  Q
    ||||||||||||||    
T  13836947 cattttgatttctt 13836960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 35123162 - 35123235
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| |||||||||||||||| | |||| ||  ||||||||||||||||  ||| ||||||||||||    
T  35123162 aaattgttatcattagggtggctgaaagctgaaaaagccatgtttgtttatggtacttagatgtggtggtcaag 35123235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 2893738 - 2893653
Alignment:
Q  188 tcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    |||||||| |||| |||||| ||||||||||||||| || |||||||  |||| | | ||| || |||||||||||||||||||||||    
T  2893738 tcttgtaactttt-agtggtttcctaggcacaccttgtgcttgggaactgctgtttggtgt-gttatttaattccattttgatttctt 2893653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 38926502 - 38926247
Alignment:
Q  18 tgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtgg 117  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38926502 tgttactactattcctcgcttgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctatgtttgtttatggtacgcagaggtgg 38926403  T
Q  118 tggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggca 217  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  38926402 tggtcaagcccgttagattgtctggacattggctaacttgtattctctctgttttagtt-ttttctgacatattgtaattttttagtggtctcctaggca 38926304  T
Q  218 caccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
     ||||| || |||| ||  |||||| ||||||||||| ||||| | ||||||||||||    
T  38926303 taccttatgcttggaaactgctgattgttgtggtaatataatttc-ttttgatttctt 38926247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 18369387 - 18369518
Alignment:
Q  28 attcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcc 127  Q
    ||||||||  ||||| ||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  18369387 attcctcgcctgttagataaggttaaattgttatctttaggttggctgaaagctaaaaaggctgtgtttgtctatggtacgcagaggtggtggtcaagcc 18369486  T
Q  128 c-gttagaatgtttggacattggctaacttgt 158  Q
    |  ||||| ||||||| |||||||||||||||    
T  18369487 cttttagattgtttgggcattggctaacttgt 18369518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 36708576 - 36708466
Alignment:
Q  45 taaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggac 144  Q
    |||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||| ||||  ||||||| |    
T  36708576 taaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtcaagccctttagcttgtttgggc 36708477  T
Q  145 attggctaact 155  Q
    |||||||||||    
T  36708476 attggctaact 36708466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 15484225 - 15484342
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||| |||| |||||| |||||||||||||| ||||  ||    
T  15484225 tgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttacggtatgcagagatggtggtcaagccctttagcttg 15484324  T
Q  138 tttggacattggctaact 155  Q
    ||||| ||||| ||||||    
T  15484325 tttgggcattgactaact 15484342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 275
Target Start/End: Original strand, 42675873 - 42676114
Alignment:
Q  31 cctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgt 130  Q
    ||||| |||||| ||||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||  ||| |    
T  42675873 cctcgattgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtcagaccctt 42675972  T
Q  131 tagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttg 230  Q
    | |  ||||| | | ||||||| || || || |||||| ||    |||||| | |  |||||||| |||| |||||| ||||||||||||||| || |||    
T  42675973 ttgcttgtttaggc-ttggctagctagtgttatctctggttgttgtattttttaaactcttgtaactttt-agtggtttcctaggcacaccttgtgcttg 42676070  T
Q  231 ggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    || |  |||| | | ||| || |||||||||||||||||||||||    
T  42676071 gggactgctgtttggtgt-gttatttaattccattttgatttctt 42676114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 9163585 - 9163688
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggct 151  Q
    |||||||||||||||||||||||||||| ||||||  |  |||||||||||||||| |||| |||||||||||| || |||  |||||| |  |||||||    
T  9163585 aaattgttatctttagggtggctgaaagctaaaaaaaccatgtttgtttatggtactcagatgtggtggtcaagtcctttaacatgtttaggaattggct 9163684  T
Q  152 aact 155  Q
    ||||    
T  9163685 aact 9163688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 20822938 - 20823021
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtgg 120  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| ||| |||| ||||||||| |||| ||||||||| ||||||    
T  20822938 ttgttagataaggttaaattgttatctttggggtggctgaaagctaataaggttgtgtttgtgtatgatacgcagagatggtgg 20823021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 26009742 - 26009623
Alignment:
Q  36 tttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaa 135  Q
    ||||||| |||| || ||||| ||||||||| ||||||||||||  ||||| | | ||||||||| ||| |||| |||||||||||||| ||| ||||      
T  26009742 tttgttagataaagttaaattattatctttaaggtggctgaaagccaaaaatgttatgtttgtttttggcacgccgaggtggtggtcaaaccctttagct 26009643  T
Q  136 tgtttggacattggctaact 155  Q
    ||||||| ||||||||||||    
T  26009642 tgtttgggcattggctaact 26009623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 45683875 - 45683799
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagag 113  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||||| ||| ||||| | ||||||||||||    
T  45683875 ttgttagataaagttaaattgttatctttggggtggctgaaagctaaaaaggttgtatttgtctttggtacgcagag 45683799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 19824251 - 19824324
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    |||||| |||| |||||||||||||||| |||||| ||  |||||||||||| ||| |||| ||||||||||||    
T  19824251 aaattgatatcattagggtggctgaaagctaaaaaagccatgtttgtttatgatactcagatgtggtggtcaag 19824324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 54440561 - 54440671
Alignment:
Q  44 ataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttgga 143  Q
    ||||| ||||||||||||| |||| |||| |||||| |||||| ||  | |||| || |||||| || |||||||||||||| || || |  |||||||     
T  54440561 ataagatcaaattgttatcgttagtgtggatgaaaggtaaaaaagccatatttgattttggtactcataggtggtggtcaagtcctttggcttgtttggg 54440660  T
Q  144 cattggctaac 154  Q
    |||||||||||    
T  54440661 cattggctaac 54440671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 9319567 - 9319672
Alignment:
Q  28 attcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcc 127  Q
    ||||| ||| ||||| | || |||||| |||||||| ||||||||||||| | |||||| |   ||||||| ||||| || ||||||||||||||| |||    
T  9319567 attccacgtctgttagacaaagtcaaactgttatctctagggtggctgaaggctaaaaatgtcatgtttgtgtatggcactcagaggtggtggtcatgcc 9319666  T
Q  128 cgttag 133  Q
    | ||||    
T  9319667 ctttag 9319672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 155
Target Start/End: Complemental strand, 45759593 - 45759467
Alignment:
Q  29 ttcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagccc 128  Q
    |||| ||||||||| | ||||| ||||||||||| ||||  | ||||||||  ||| | | | ||||||| | ||| ||||||||||||||||||| | |    
T  45759593 ttccccgtttgttagacaaggtgaaattgttatcgttagtattgctgaaagccaaatatgttatgtttgtatttggcacgcagaggtggtggtcaaacac 45759494  T
Q  129 gttagaatgtttggacattggctaact 155  Q
     ||||  |||||||  |||||||||||    
T  45759493 tttagcttgtttgggtattggctaact 45759467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 28675350 - 28675455
Alignment:
Q  17 ttgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtg 116  Q
    |||||||| | |||||||| |||||| | ||||| ||  |||| |||||||| ||| ||||||||||||| |||   |||||||  |||||||||  |||    
T  28675350 ttgttactcccattcctcgattgttagacaaggttaagatgttgtctttaggctggttgaaagttaaaaaagctacttttgttttcggtacgcagtagtg 28675449  T
Q  117 gtggtc 122  Q
    ||||||    
T  28675450 gtggtc 28675455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 17605316 - 17605348
Alignment:
Q  90 tgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    |||||||||||||||||||||||| ||||||||    
T  17605316 tgtgtttgtttatggtacgcagagatggtggtc 17605348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 23066467 - 23066728
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||| ||||||| |||||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||    
T  23066467 aatactgttactactattcctcgcttgttagataagatcaaattgttatctttagggtggctgaaagctaaaaacgttgtgtttgtttatggtacgcaga 23066566  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcct 212  Q
    |||||||||||||||| ||||| ||| ||| ||||||||||||||| |||||| |||||||||| ||| |||||||||||||||||||||| ||||||||    
T  23066567 ggtggtggtcaagcccattagattgtctgggcattggctaacttgtgttttctttgttttagtt-tttgctgacatcttgtaattttttagcggtctcct 23066665  T
Q  213 aggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    || |||||||| || |||||||  |||||| ||||||||||| ||||| ||||||||||||||    
T  23066666 agtcacaccttgtgcttgggaactgctgattgttgtggtaatataatttcattttgatttctt 23066728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 31297561 - 31297827
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||||||||||| ||  |||||| |||||| |||||||||||||||||||||||| ||||||||||  |||||||||  |||||||||||||||||||||    
T  31297561 aatattgttactactgctcctcgcttgttagataaggtcaaattgttatctttagagtggctgaaaactaaaaaggcaatgtttgtttatggtacgcaga 31297660  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagt-tat---tttctgacatcttgtaattttttagtggtc 208  Q
    |||||||||||||||||||||| ||| ||| ||||||||||| ||| ||||||| |||||||| |||   ||||| |||| |||||| ||||||| ||||    
T  31297661 ggtggtggtcaagcccgttagattgtctgggcattggctaacatgtgttttctcagttttagtatatatatttctaacattttgtaactttttagcggtc 31297760  T
Q  209 tcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    |||| ||||||| || || |||||||  |||||| ||||| || || ||||| ||||||||||||||    
T  31297761 tcctgggcacacattgtgcttgggaactgctgattgttgtagttatataatttcattttgatttctt 31297827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 9565065 - 9564945
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| ||||||||||||||| ||| |||||||| |||||||| ||||||| ||||||||||||| ||||| ||||||| ||| ||||| ||    
T  9565065 tgttagataaggttaaattgttatctttaaggtagctgaaagctaaaaaggttgtgtttatttatggtacgcaaaggtgatggtcaaaccctttagattg 9564966  T
Q  138 tttggacattggctaacttgt 158  Q
    ||||| |||||||||||||||    
T  9564965 tttgggcattggctaacttgt 9564945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 24378476 - 24378390
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||    
T  24378476 ttgttagataaggttaaattgttatctttggggtggttgaaagttaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 24378390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 1568930 - 1568876
Alignment:
Q  84 aaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1568930 aaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgt 1568876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6004667 - 6004581
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| | ||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  6004667 ttgttagaaaaggttaaattgttatctttggggtggctgaaagctaaaaaagttgtgtttgtttatggtacgcagagatggtggtca 6004581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6008197 - 6008111
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||| | ||||||||||||||||| |||||| |||||||||    
T  6008197 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtatgcagagatggtggtca 6008111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26010571 - 26010485
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| |||||||| |||| |||||| | |||||||||||||||||||||||| |||||||||    
T  26010571 ttgttagataaggttaaattgttatctttggggtggcttaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 26010485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 9051186 - 9051082
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||| |||||||||||||  |||| || ||||||||| |||||||| ||||| |||||||||||||| ||||  ||    
T  9051186 tgttagataaggttaaattgttatctttggggtggctgaaagcgaaaagggttgtgtttgtctatggtactcagagttggtggtcaagccctttagcttg 9051087  T
Q  138 tttgg 142  Q
    |||||    
T  9051086 tttgg 9051082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 10008688 - 10008797
Alignment:
Q  44 ataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttgga 143  Q
    |||||||||||||||||||| ||||||||||||| |  ||||| ||   |||||| | |||||| || ||||||||||||||||| ||||  |||||||     
T  10008688 ataaggtcaaattgttatctctagggtggctgaaggcaaaaaatgccaagtttgtatctggtacccaaaggtggtggtcaagccccttagtttgtttggg 10008787  T
Q  144 cattggctaa 153  Q
    ||||||||||    
T  10008788 cattggctaa 10008797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 33804465 - 33804392
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| ||||||||||| |||| |||||| ||  |||||||||||||||| |||| ||||||||||||    
T  33804465 aaattgttatcattagggtggcttaaagctaaaaatgccatgtttgtttatggtactcagatgtggtggtcaag 33804392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 21548547 - 21548461
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||  | ||| ||||||||||||| |||||| | |||||||| ||||||||| ||||| |||||||||    
T  21548547 ttgttagataaggttaaattgtattatttggggtggctgaaagctaaaaatgttgtgtttgcttatggtacacagagatggtggtca 21548461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 24749332 - 24749229
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggct 151  Q
    |||||||||||| ||||||||||||||   |||||  |  ||||||||| ||| || ||||| || ||||||||||| ||||  ||||||| ||||||||    
T  24749332 aaattgttatctctagggtggctgaaaaccaaaaataccatgtttgtttttggcactcagagatgatggtcaagccctttagcttgtttgggcattggct 24749233  T
Q  152 aact 155  Q
    ||||    
T  24749232 aact 24749229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Complemental strand, 11454628 - 11454550
Alignment:
Q  197 tttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    ||||||||| ||||||||||||||||| |  |||| || ||||||| |||| ||| || ||||| ||||| ||||||||    
T  11454628 tttttagtgatctcctaggcacaccttgtacttggaaaccgctgattgttgcggttatataatttcatttggatttctt 11454550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 35487568 - 35487307
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| || |||||||||||| |||||    
T  35487568 aatactgttactactattcctcgcttgttagataaggtcaaattgttatctttagggtggctaaaagctaaaaatgctatgcttgtttatggtatgcaga 35487469  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaa--ttttttagtggtctc 210  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||||| || ||||||||||| || ||||||||||||||||||  |||||||||||||||    
T  35487468 ggtggtggtcaagcccgttagattgcctgggcattggctaacttgtgttctctctgttttaatt-ttttctgacatcttgtaattttttttagtggtctc 35487370  T
Q  211 ctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttct 274  Q
    ||||||||||||| || ||  |||  |||||| ||||||||||| ||||| |||||||||||||    
T  35487369 ctaggcacaccttatgctt-tgaactgctgattgttgtggtaatataatttcattttgatttct 35487307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 37 - 275
Target Start/End: Original strand, 8066667 - 8066905
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaat 136  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||| |    
T  8066667 ttgttagataaggtcaaattgttatctttagggtggctgaaagttaaaaagacaatgtttgtttttggtacgcagaggtggtggtcaagcccgttagatt 8066766  T
Q  137 gtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatc 236  Q
    || | | ||||||||||| ||| ||||||||||||||||   ||||||||||||||||| |||||| |||||||||| ||||||||| |||||| ||||     
T  8066767 gtctaggcattggctaacctgtgttttctctgttttagtatatttctgacatcttgtaactttttaatggtctcctaagcacaccttgtgtttgagaatt 8066866  T
Q  237 gctgatggttgtggtaatttaattccattttgatttctt 275  Q
    ||||||  ||||| | || |||||  |||||||||||||    
T  8066867 gctgattattgtgattatataattttattttgatttctt 8066905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 36069506 - 36069629
Alignment:
Q  154 cttgtcttttctctgttttagttatttt--ctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggt 251  Q
    ||||| |||||| |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||| || |||||||  |||||| ||||||||    
T  36069506 cttgtgttttctttgttttagtttttttttctgacatcttgtaattttttagtggtctcctaggcacaccttgtgcttgggaactgctgattgttgtggt 36069605  T
Q  252 aatttaattccattttgatttctt 275  Q
    ||| ||||| ||||||||||||||    
T  36069606 aatataatttcattttgatttctt 36069629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 37643197 - 37643111
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  37643197 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagttggtggtca 37643111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 16212884 - 16212798
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| |||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| || ||||||    
T  16212884 ttgttagataatgttaaattgttatctttggggtggctgaaagttaaaaaggttgtgtttgtttatggtacgcagagttgatggtca 16212798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 33913072 - 33912986
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||| ||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  33913072 ttgttagataaggttaaattgttatttttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 33912986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 28400991 - 28401077
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||||| ||| ||||| |||||||||||||| |||||||||    
T  28400991 ttgttagataaagttaaattgttatctttggggtggctgaaagctaaaaaggttgtatttgtctatggtacgcagagatggtggtca 28401077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 21614350 - 21614230
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||||||| ||  ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||| | |||||| || |||||||| | ||| || ||||    
T  21614350 aatattgtaacacctatttctcgtctgttagataagatcaaattgttatctctagggtggctgaaggctaaaaatgccgtgtttgtgtttggcacccaga 21614251  T
Q  113 ggtggtggtcaagcccgttag 133  Q
     ||||||||| ||||| ||||    
T  21614250 tgtggtggtctagccctttag 21614230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 36803610 - 36803492
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| |||| || ||||||||||| ||||| ||||||||||  ||||| |   ||||||||| ||| ||||||||||||||||||||| | |||   ||    
T  36803610 tgttagataaagttaaattgttatcattaggttggctgaaagcaaaaaatgtcatgtttgtttttggcacgcagaggtggtggtcaagctctttaacttg 36803511  T
Q  138 tttggacattggctaactt 156  Q
    |||||| ||||||||||||    
T  36803510 tttggatattggctaactt 36803492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 43782480 - 43782558
Alignment:
Q  46 aaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaa 124  Q
    ||||| |||||||||||| ||| |||||| ||||  ||||| |   ||||||||| ||| |||||||||||||||||||    
T  43782480 aaggttaaattgttatctctagagtggcttaaagccaaaaatgtaatgtttgtttttggcacgcagaggtggtggtcaa 43782558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 31594246 - 31594162
Alignment:
Q  44 ataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagccc 128  Q
    ||||||| |||||| | |||||||| |||||||||| |||||| |||   ||||||| ||| || |||  |||||||||||||||    
T  31594246 ataaggttaaattgatgtctttaggttggctgaaagctaaaaaagctacctttgtttttggaactcagcagtggtggtcaagccc 31594162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 275
Target Start/End: Complemental strand, 40467532 - 40467287
Alignment:
Q  30 tcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccg 129  Q
    |||||| |||||| |||||||||||||||||||||||| ||||||||||| ||| ||| |  |||||||||||||||||||||| |||| ||||||||||    
T  40467532 tcctcgcttgttagataaggtcaaattgttatctttagagtggctgaaagctaagaagacaatgtttgtttatggtacgcagagatggtagtcaagcccg 40467433  T
Q  130 ttagaatgtttggacattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgttt 229  Q
    ||||| ||| ||| ||||||||||| ||| ||||||||||||||||   ||||||||||||||||| |||||||||||||| |||||||||||| || ||    
T  40467432 ttagattgtctgggcattggctaacctgtgttttctctgttttagtatatttctgacatcttgtaactttttagtggtctcataggcacaccttgtgctt 40467333  T
Q  230 gggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    |||||  |||||| |||||||| || ||||| ||||||||||||||    
T  40467332 gggaactgctgattgttgtggttatataatttcattttgatttctt 40467287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 30 - 223
Target Start/End: Complemental strand, 23942023 - 23941830
Alignment:
Q  30 tcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccg 129  Q
    |||||| |||||| |||||||||||||||||||||||| ||| ||||||| |||||||||  |||||||||||||||||||||| ||||||||||||| |    
T  23942023 tcctcgcttgttagataaggtcaaattgttatctttagagtgactgaaagctaaaaaggcaatgtttgtttatggtacgcagagatggtggtcaagcctg 23941924  T
Q  130 ttagaatgtttggacattggctaacttgtcttttctctgttttagt-tattttctgacatcttgtaattttttagtggtctcctaggcacacctt 223  Q
    ||||| ||| ||| ||||| ||||| ||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  23941923 ttagattgtctgggcattgactaacctgtgttttctctgttttagtatatttt-tgacatcttgtaactttttagtggtctcctaggcacacctt 23941830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 44083453 - 44083538
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    |||||| ||||||| |||||||||||||| |||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  44083453 ttgttagataaggttaaattgttatctttggggtggttgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtc 44083538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 23898344 - 23898441
Alignment:
Q  178 ttttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaattccattttgatttctt 275  Q
    ||||||||||||||||||||||||||||||||| |||  ||| ||| || |||||||  |||||| ||||||||||| ||||| ||||||||||||||    
T  23898344 ttttctgacatcttgtaattttttagtggtctcttagctacatcttatgcttgggaactgctgattgttgtggtaatataatttcattttgatttctt 23898441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 15148052 - 15148140
Alignment:
Q  67 gggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggctaact 155  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||| ||||  |||||||   ||||||||||    
T  15148052 gggtggctgaaagctaaaaaggttgtgtttgtttatggtacgtagagatggtggtcaagccctttagcttgtttgggtgttggctaact 15148140  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 27083338 - 27083115
Alignment:
Q  13 aatattgttacttctattcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcaga 112  Q
    |||||||| || ||| |||||||  ||||| ||||||| |||||||||||  |||| || |||||||||||||| |   ||||||||| | |||| ||||    
T  27083338 aatattgtaacctctgttcctcgactgttagataaggttaaattgttatccataggatgactgaaagttaaaaatgtcatgtttgtttttcgtactcaga 27083239  T
Q  113 ggtggtggtcaagcccgttagaatgtttggacattggctaact--tgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctc 210  Q
    ||||||| |||||||| ||||  ||| ||  ||||| ||||||  | |  |||||||||||   |   || ||||||| |||||| ||| ||||||||||    
T  27083238 ggtggtgatcaagccctttagcttgtctgtgcattgactaactaatattgtttctctgtttccttgggttactgacattttgtaactttgtagtggtctc 27083139  T
Q  211 ctaggcacaccttttgtttgggaa 234  Q
    ||||||||||||| || |||||||    
T  27083138 ctaggcacaccttgtgcttgggaa 27083115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 43613497 - 43613601
Alignment:
Q  29 ttcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagccc 128  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||| | |||||| ||  ||||| | ||||| || |||| ||||||||| |||||    
T  43613497 ttcctcgtctgttagataaggtcaaattgttatcttcagggtggctgaaggctaaaaatgccatgtttatgtatggcacccagatgtggtggtctagccc 43613596  T
Q  129 gttag 133  Q
     ||||    
T  43613597 tttag 43613601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 44616308 - 44616197
Alignment:
Q  160 ttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatggttgtggtaatttaat 259  Q
    ||||||||||||||||   |||||||| |||||||| ||||||||||||||||||||| ||||| || |||||||  ||| || ||||| || || ||||    
T  44616308 ttttctctgttttagtatgtttctgacttcttgtaactttttagtggtctcctaggcaaaccttgtgcttgggaactgct-attgttgtagttatataat 44616210  T
Q  260 tccattttgattt 272  Q
    | |||||||||||    
T  44616209 ttcattttgattt 44616197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 8639389 - 8639328
Alignment:
Q  94 tttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggctaact 155  Q
    ||||||| || |||||||||||||||||| ||||| ||||  ||||||| ||||||||||||    
T  8639389 tttgtttttgatacgcagaggtggtggtcgagccctttagtttgtttgggcattggctaact 8639328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 6900586 - 6900479
Alignment:
Q  46 aaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggaca 145  Q
    ||||| ||||||| |||| ||||||| |||||||  ||||| |   ||||||||| ||| ||||||||||||||| ||| ||| || |  ||||||| ||    
T  6900586 aaggttaaattgtgatctctagggtgactgaaagccaaaaatgtcatgtttgtttttggcacgcagaggtggtggacaaacccttttgcttgtttgggca 6900487  T
Q  146 ttggctaa 153  Q
    ||||||||    
T  6900486 ttggctaa 6900479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 38 - 234
Target Start/End: Original strand, 34854082 - 34854276
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||| ||||||||||||||| |||||||||  ||||||||| ||||||| |||||||||||||||| || ||||| ||    
T  34854082 tgttagataaggttaaattgttatctctagggtggctgaaagctaaaaaggccatgtttgtttttggtacgtagaggtggtggtcaagtcctttagattg 34854181  T
Q  138 tttggacattggctaacttgtcttttctctg-ttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaa 234  Q
    | ||| ||||| ||||| |  | |||||||| |||| ||   || || ||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  34854182 tctgggcattgactaac-taacgtttctctgatttttgt--gttactaacatcttgtaactttttagtggtctcctaggcacaccttctgcttgggaa 34854276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 37139559 - 37139685
Alignment:
Q  29 ttcctcgtttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagccc 128  Q
    |||| ||| ||||| ||||||| ||||||||||| ||||  ||||||||||  ||||| | | ||||||| | ||| |||||||||||||||||||||||    
T  37139559 ttccccgtctgttatataaggtgaaattgttatcgttagtatggctgaaagccaaaaatgttatgtttgtgtttggcacgcagaggtggtggtcaagccc 37139658  T
Q  129 gttagaatgtttggacattggctaact 155  Q
     |||   |||||||  |||||||||||    
T  37139659 tttaacttgtttgggtattggctaact 37139685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 16873948 - 16874021
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| |||||||||||||||| |||||| ||  ||||| |||||||||| || | ||||||||||||    
T  16873948 aaattgttatcattagggtggctgaaagctaaaaaagccatgtttatttatggtactcatatgtggtggtcaag 16874021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 44929915 - 44929847
Alignment:
Q  57 gttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| ||||||||||| || ||| |   ||||||||| |||||| |||| ||||||||||||    
T  44929915 gttatctttagtgtggctgaaagctataaaagtcatgtttgtttttggtactcagatgtggtggtcaag 44929847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 38 - 171
Target Start/End: Complemental strand, 50451777 - 50451645
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||    
T  50451777 tgttagataaggttaaattgttatctttaggagggctgaaagctaaaaaggttgtgtttgtttatggtacgcagaggtggtggtcaaaccctttagattg 50451678  T
Q  138 tttggacattggctaacttgtcttttctctgttt 171  Q
    | | ||||||||||||||||| |  |||||||||    
T  50451677 tct-gacattggctaacttgtgtaatctctgttt 50451645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 26693626 - 26693540
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| ||||||| |||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||| |||||||||    
T  26693626 ttgttagataaggttaaattgttatctttggggtggctgaaagctaaaaatgttgtgtttgtttatggtacgcagagatggtggtca 26693540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 155
Target Start/End: Complemental strand, 55223350 - 55223232
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaat 136  Q
    |||||| ||||||| ||||| |||||||| |||| | |||||| |||||||| |||||||||||||||||||||||| |||||||||  ||| ||||  |    
T  55223350 ttgttatataaggttaaattattatctttggggttgttgaaagctaaaaaggttgtgtttgtttatggtacgcagagttggtggtcagaccctttagctt 55223251  T
Q  137 gtttggacattggctaact 155  Q
    |||||| | ||||||||||    
T  55223250 gtttgggctttggctaact 55223232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 46639431 - 46639517
Alignment:
Q  37 ttgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtca 123  Q
    |||||| |||| || |||||||||||||| ||||||||||||| |||||||| ||| ||||| ||||||||||| || |||||||||    
T  46639431 ttgttagataaagttaaattgttatctttggggtggctgaaagctaaaaaggttgtatttgtctatggtacgcatagatggtggtca 46639517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Original strand, 3728465 - 3728592
Alignment:
Q  144 cattggctaacttgtcttttctctgttttagttattttctgacatcttgtaattttttagtggtctcctaggcacaccttttgtttgggaatcgctgatg 243  Q
    |||||| |||| ||| |||||| |||||||||   ||| ||||||||||||| |||||||||||||||||  || ||||| |||||| |||  ||| ||     
T  3728465 cattggttaacctgtgttttctttgttttagtatgtttttgacatcttgtaactttttagtggtctcctaaacataccttgtgtttgagaactgct-att 3728563  T
Q  244 gttgtggtaatttaattccattttgattt 272  Q
    |||||||| || ||||| |||||||||||    
T  3728564 gttgtggttatataatttcattttgattt 3728592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 20669170 - 20669097
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| ||||||||| |||| | |||||| ||  |||||||||||||||| |||| ||||||||||||    
T  20669170 aaattgttatcattagggtggatgaaggctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 20669097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 42169475 - 42169576
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttggacattggct 151  Q
    ||||||||||| ||||| ||||||||||  ||| | |   ||||||||| ||| ||||||||||||||||||||||| ||||  |||||||  |||||||    
T  42169475 aaattgttatcgttaggttggctgaaagcaaaagatgtcatgtttgtttttggcacgcagaggtggtggtcaagccctttagcttgtttggctattggct 42169574  T
Q  152 aa 153  Q
    ||    
T  42169575 aa 42169576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 72145 - 72262
Alignment:
Q  38 tgttaaataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatg 137  Q
    ||||| ||||||| |||||||||||||| |||||  |||||| |||||| | ||||||||||||||||| |||||| |||||||||| ||| ||||  ||    
T  72145 tgttagataaggttaaattgttatctttggggtgattgaaagctaaaaatgttgtgtttgtttatggtatgcagagttggtggtcaaaccctttagcttg 72244  T
Q  138 tttggacattggctaact 155  Q
    ||||| ||||||||||||    
T  72245 tttgggcattggctaact 72262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 41819 - 41749
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtc 122  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||    
T  41819 aaattgttatctttggggtggctgaaagctaaaaaggttgtgtttgtttatggtacgcagagatggtggtc 41749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 16050 - 16174
Alignment:
Q  44 ataaggtcaaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaagcccgttagaatgtttgga 143  Q
    ||||||||||||||||| || ||||||||||||||| ||| || |   ||||||||| |||||  |||||||||||||||||||| ||||  ||| |||     
T  16050 ataaggtcaaattgttagctctagggtggctgaaagctaagaatgtcatgtttgtttttggtatacagaggtggtggtcaagccctttagcttgtctgg- 16148  T
Q  144 cattggctaacttgtcttttctctgtt 170  Q
    ||||||||||||| | |||||||||||    
T  16149 cattggctaactt-tgttttctctgtt 16174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 16346 - 16273
Alignment:
Q  52 aaattgttatctttagggtggctgaaagttaaaaaggctgtgtttgtttatggtacgcagaggtggtggtcaag 125  Q
    ||||||||||| |||||||||||||||| |||||| ||  |||||||||||||||| |||| ||||||||||||    
T  16346 aaattgttatcattagggtggctgaaagctaaaaaagccatgtttgtttatggtactcagatgtggtggtcaag 16273  T

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