View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14106_high_1 (Length: 505)
Name: NF14106_high_1
Description: NF14106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14106_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 59 - 486
Target Start/End: Original strand, 36398012 - 36398425
Alignment:
| Q |
59 |
ttgaatatataggcatcattgcatcaagtaaacaagctacctgaactgagcatgaaggtcttaattctccaggtgaagtggaacattaacgtattaatca |
158 |
Q |
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| T |
36398012 |
ttgaatatataggcatcattgcatcaagtaaacaagctacctgaactgagcatgaaggtcttaattctccaggtgaagtggaacattaacgtattaatca |
36398111 |
T |
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| Q |
159 |
gctagctgcttaaagaagcaaataacataaaacaaaccaaagctgcttttaaattctatgtgacaattttgttaggcttttgattttgttcattaactag |
258 |
Q |
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| T |
36398112 |
gctagctgcttaaagaagcaaataacataaaacaaaccaaagctgcttttacattctatgtgacaattttgttaggcttttgattttgttcattaactag |
36398211 |
T |
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| Q |
259 |
atttcatgttcttaattatgcagtatttctgcaagtggattgcttttccctaacagttttgctttcaaggatttggagtttctgtctatcaagatattct |
358 |
Q |
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| T |
36398212 |
atttcatgttcttaattatgcagtatatctgcaagtggattgcttttccctaacagttttgctttcaaggatttggagtttctgtctatcaagat----- |
36398306 |
T |
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| Q |
359 |
aagtactaattctaagttctaacaaaagagtagaatgtgaaaatttcaaaccggaagctaccccatttaacacccaggagcgtcaattctatgaagcgct |
458 |
Q |
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| T |
36398307 |
--------attctaagttctaac-aaagagtagaatgtgaaaatttcgaaccggaagctaccccatttaacacccaggagcgtcaattcaatgaagcgct |
36398397 |
T |
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| Q |
459 |
cgggtatattcattttacatgatacact |
486 |
Q |
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| T |
36398398 |
cgggtatattcattgtacatgatacact |
36398425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36397908 - 36397969
Alignment:
| Q |
1 |
aaacttgagattaattgaataaaaaagaagaatagcaatatgcttaatttgcaattcattga |
62 |
Q |
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| T |
36397908 |
aaacttgagattaattgactaaaaaagaagaatagcaatatgcttaatttgcaattcattga |
36397969 |
T |
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