View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14106_high_2 (Length: 380)

Name: NF14106_high_2
Description: NF14106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14106_high_2
NF14106_high_2
[»] chr4 (11 HSPs)
chr4 (123-363)||(45342238-45342472)
chr4 (192-363)||(45346781-45346946)
chr4 (20-155)||(45342007-45342147)
chr4 (57-319)||(45363933-45364194)
chr4 (57-319)||(45375173-45375434)
chr4 (57-319)||(45382752-45383013)
chr4 (192-300)||(48872668-48872776)
chr4 (192-300)||(48877972-48878080)
chr4 (192-296)||(48865615-48865717)
chr4 (195-259)||(48856158-48856222)
chr4 (207-300)||(48842761-48842854)
[»] chr3 (3 HSPs)
chr3 (195-299)||(11014035-11014139)
chr3 (200-299)||(11023353-11023452)
chr3 (215-299)||(11004561-11004645)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 8e-74; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 123 - 363
Target Start/End: Original strand, 45342238 - 45342472
Alignment:
Q  123 aagccaagcacgggagtataattttctcatttacataannnnnnnnaattaaattgtctatannnnnnnagctgtccaagcaaactcagctcagatgagc 222  Q
    |||| ||||||  |||||||||||||||||||||||||        ||||||||||||||||       |||||||||||| ||||||||||||||||||    
T  45342238 aagctaagcacatgagtataattttctcatttacataattttttttaattaaattgtctatatttttttagctgtccaagcgaactcagctcagatgagc 45342337  T
Q  223 tttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatctcaacaaaaatccctggaactgga 322  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||      || ||    
T  45342338 tttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttctatagtatatctcaacaaaaatcc------ctaga 45342431  T
Q  323 actacaaccattgaagaatggaaactaaacagcaagaatca 363  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45342432 actacaaccattgaagaatggaaactaaacagcaagaatca 45342472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 45346781 - 45346946
Alignment:
Q  192 agctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttata 291  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45346781 agctgtccaagcgaactcagctcagatgagctttgtcgtgaatcatcaattcaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttata 45346880  T
Q  292 ttatatctcaacaaaaatccctggaactggaactacaaccattgaagaatggaaactaaacagcaagaatca 363  Q
    ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  45346881 ttatatctcaacaaaaatcc------ctggaactacaaccattgaagaatggaaactaaacagcaagaatca 45346946  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 45342007 - 45342147
Alignment:
Q  20 acccaaatttcattatcggcttattaggccatctgttcatgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggt----- 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  45342007 acccaaatttcattatcggcttattaggccatctgttcatgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaa 45342106  T
Q  115 cacaacagaagccaagcacgggagtataattttctcattta 155  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  45342107 cacaacagaagccaagcacgggagtataattttctccttta 45342147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 45363933 - 45364194
Alignment:
Q  57 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataattttctcatttac 156  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||     
T  45363933 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataattttctcctttat 45364032  T
Q  157 ataannnnnnnnaattaaattgtctatannnnnnnagctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagc 256  Q
    | ||        |||||||||| ||| |       ||||||| ||||||||||| | ||||||| ||||||| ||||||||||||| |||||||||||||    
T  45364033 acaa-aaaaattaattaaattgccta-atttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagc 45364130  T
Q  257 ta-ttgtaggtggaaaacacgtaaatggtttttatattatatctcaacaaaaatccctggaact 319  Q
    || || ||||| |||||||  | ||  |||||||||||||||||| |  |||||||||||||||    
T  45364131 tacttataggttgaaaacatatgaacagtttttatattatatctctaacaaaatccctggaact 45364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 45375173 - 45375434
Alignment:
Q  57 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataattttctcatttac 156  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||     
T  45375173 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataattttctcctttat 45375272  T
Q  157 ataannnnnnnnaattaaattgtctatannnnnnnagctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagc 256  Q
    | ||        |||||||||| ||| |       ||||||| ||||||||||| | ||||||| ||||||| ||||||||||||| |||||||||||||    
T  45375273 acaa-aaaaattaattaaattgccta-atttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagc 45375370  T
Q  257 ta-ttgtaggtggaaaacacgtaaatggtttttatattatatctcaacaaaaatccctggaact 319  Q
    || || ||||| |||||||  | ||  |||||||||||||||||| |  |||||||||||||||    
T  45375371 tacttataggttgaaaacatatgaacagtttttatattatatctctaacaaaatccctggaact 45375434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 57 - 319
Target Start/End: Original strand, 45382752 - 45383013
Alignment:
Q  57 catgattgctaactgtattaggtgcttgaattgattgcgccacataatcatttccggtcacaacagaagccaagcacgggagtataattttctcatttac 156  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||||||| ||||     
T  45382752 catgattgctaactgtattaggtgcttgaattgattgcaccacataatcatttccaatcataacagaagccaagcacgggagtataattttctcctttat 45382851  T
Q  157 ataannnnnnnnaattaaattgtctatannnnnnnagctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagc 256  Q
    | ||        |||||||||| ||| |       ||||||| ||||||||||| | ||||||| ||||||| ||||||||||||| |||||||||||||    
T  45382852 acaa-aaaaattaattaaattgccta-atttttttagctgtcaaagcaaactcaacacagatgaactttgtcttgaatcatcaattcaaaaagcttgagc 45382949  T
Q  257 ta-ttgtaggtggaaaacacgtaaatggtttttatattatatctcaacaaaaatccctggaact 319  Q
    || || ||||| |||||||  | ||  |||||||||||||||||| |  |||||||||||||||    
T  45382950 tacttataggttgaaaacatatgaacagtttttatattatatctctaacaaaatccctggaact 45383013  T

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Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 48872776 - 48872668
Alignment:
Q  192 agctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttata 291  Q
    ||||||| ||||||| |||||||| |||| ||| ||||||||||||| ||| |||||| ||||| |||| |||||||||||||| | ||  |||||||||    
T  48872776 agctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacacatgaaaagtttttata 48872677  T
Q  292 ttatatctc 300  Q
    |||||||||    
T  48872676 ttatatctc 48872668  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 48878080 - 48877972
Alignment:
Q  192 agctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttata 291  Q
    ||||||| ||||||| |||||||| |||| ||| ||||||||||||| ||| |||||| ||||| |||| |||||||||||||| | ||  |||||||||    
T  48878080 agctgtcaaagcaaaatcagctcaaatgaacttggtcgtgaatcatcgattcaaaaaggttgagttattttaggtggaaaacacatgaaaagtttttata 48877981  T
Q  292 ttatatctc 300  Q
    |||||||||    
T  48877980 ttatatctc 48877972  T

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Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 296
Target Start/End: Complemental strand, 48865717 - 48865615
Alignment:
Q  192 agctgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttata 291  Q
    |||||||||| ||||||||||| |||||| ||||||||||||| ||| ||| ||||||||||||||||| || |  ||||||||  |||  |||||||||    
T  48865717 agctgtccaaacaaactcagcttagatgaactttgtcgtgaatgatccattcaaaaagcttgagctattttaaggtgaaaacac--aaacagtttttata 48865620  T
Q  292 ttata 296  Q
    |||||    
T  48865619 ttata 48865615  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 48856222 - 48856158
Alignment:
Q  195 tgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctat 259  Q
    ||||||| |||||| |||||| ||||  |||||||||||||||||||| ||||||||| ||||||    
T  48856222 tgtccaaccaaacttagctcaaatgaattttgtcgtgaatcatcaattcaaaaagcttaagctat 48856158  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 48842761 - 48842854
Alignment:
Q  207 ctcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatctc 300  Q
    ||||| |||||||| |||||| |||||||||||||  |||||  || ||||||| |||  ||||||||| | ||  ||||||||||||||||||    
T  48842761 ctcagatcagatgaactttgttgtgaatcatcaatccaaaaaagttaagctattttagacggaaaacacatgaacagtttttatattatatctc 48842854  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 195 - 299
Target Start/End: Original strand, 11014035 - 11014139
Alignment:
Q  195 tgtccaagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatatta 294  Q
    |||||||||||||||||||||||||| ||||||   |||||||||||| ||||||||| ||||||| ||||||||||| || | ||| |||||||||| |    
T  11014035 tgtccaagcaaactcagctcagatgaactttgttaggaatcatcaattcaaaaagcttaagctattttaggtggaaaatacatgaatagtttttatatca 11014134  T
Q  295 tatct 299  Q
    |||||    
T  11014135 tatct 11014139  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 11023353 - 11023452
Alignment:
Q  200 aagcaaactcagctcagatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatct 299  Q
    ||||||||||||||||||||| |||||| ||||||||||||||  |||||||| ||||||| ||||||||||  || | ||| |||||||||| ||||||    
T  11023353 aagcaaactcagctcagatgaactttgttgtgaatcatcaattccaaaagctttagctattttaggtggaaagtacatgaatagtttttatatcatatct 11023452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 11004561 - 11004645
Alignment:
Q  215 agatgagctttgtcgtgaatcatcaattgaaaaagcttgagctattgtaggtggaaaacacgtaaatggtttttatattatatct 299  Q
    |||||| || ||| |||||||||||||| ||||||||| |||| || ||||||||||| || | ||| |||||||||| ||||||    
T  11004561 agatgaactatgttgtgaatcatcaattcaaaaagctttagcttttttaggtggaaaatacatgaatagtttttatatcatatct 11004645  T

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