View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14106_low_2 (Length: 504)
Name: NF14106_low_2
Description: NF14106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14106_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 36673773 - 36673301
Alignment:
| Q |
18 |
agggtaaacattgcacttggaatagcaagagggttatcatggctacatcatacatgcgatttgggcatagtgcattttaatatatgttcagaatgcatat |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673773 |
agggtcaacattgcacttggaatagcaagagggttatcatggctgcatcatagctgtgatttgggcatagtgcattttaatatatgttcagaatgcatat |
36673674 |
T |
|
| Q |
118 |
tgctagatgagaattttgaacccaaaatatacaattttggagaagccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673673 |
tgctagatgagaattttgaacccaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
36673574 |
T |
|
| Q |
218 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36673573 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaat |
36673474 |
T |
|
| Q |
318 |
ctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673473 |
ctatgtggtaaccctttgagtttttataacgtcattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtg |
36673374 |
T |
|
| Q |
418 |
agtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaa |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36673373 |
agtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgagcaatgtaaggaa |
36673301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Complemental strand, 36676528 - 36676068
Alignment:
| Q |
18 |
agggtaaacattgcacttggaatagcaagagggttatcatggctacatcatacatgcgatttgggcatagtgcattttaatatatgttcagaatgcatat |
117 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36676528 |
agggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatat |
36676429 |
T |
|
| Q |
118 |
tgctagatgagaattttgaacccaaaatatacaattttggagaagccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
217 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36676428 |
tgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaa |
36676329 |
T |
|
| Q |
218 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36676328 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacactactaat |
36676229 |
T |
|
| Q |
318 |
ctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676228 |
ctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtg |
36676129 |
T |
|
| Q |
418 |
agtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgag |
478 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36676128 |
agtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgag |
36676068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 213 - 483
Target Start/End: Complemental strand, 36695862 - 36695592
Alignment:
| Q |
213 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacacta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36695862 |
gtggacgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgttcatctgacacta |
36695763 |
T |
|
| Q |
313 |
ctaatctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36695762 |
ctaatctatgtggtaaccctttgagtttttataatgttattgataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgc |
36695663 |
T |
|
| Q |
413 |
ctgtgagtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgagcaatg |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36695662 |
ctgtgagtgtgttcacccttttccagaccaaaggtcaacaatgcttgaagtttacaacaatatgagcaatg |
36695592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 482
Target Start/End: Complemental strand, 36684201 - 36683740
Alignment:
| Q |
18 |
agggtaaacattgcacttggaatagcaagagggttatcatggctacatcatacatgcgatttgggcatagtgcattttaatatatgttcagaatgcatat |
117 |
Q |
| |
|
||||| ||||||||||||||| |||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
36684201 |
agggtcaacattgcacttggattagcaagaggattatcatggctccatcatagctgtgatttgggcatagtgcattttaatatatattcacaatgcatat |
36684102 |
T |
|
| Q |
118 |
tgctagatgagaattttgaacccaaaatatacaattttggagaagccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||||||||||||||||| ||| ||||||||| ||| | |
|
|
| T |
36684101 |
tgctagatgagaattttgaacccaaaatatccaattttgggcaggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaa |
36684002 |
T |
|
| Q |
218 |
cgacgggaagaaggatgtctacgactttggaagtgtgctttttgaattgatgacagggaaaacatataatgaattgtcgcgtttatctgacactactaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||| || | |||| ||| ||| |||||| |
|
|
| T |
36684001 |
tgacgggaagaaggatgtctacgactttggaagtgtgctttttgaactgattacaggaaaaacatataacgaactgactcgttcatccaccaccactaat |
36683902 |
T |
|
| Q |
318 |
ctatgtggtaaccctttgagtttttataacgtcgttgataaatctttgaccagggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtg |
417 |
Q |
| |
|
|| | || |||||||| | ||||||||| | | ||||||||||| || | || ||||| ||||||||| ||| ||| ||||| | |||||||| |||| |
|
|
| T |
36683901 |
ctctatgataacccttcaaatttttataatgccattgataaatctctgcctgggcaaggatttgaaaatggagtatgtgctctcctaaagattgcatgtg |
36683802 |
T |
|
| Q |
418 |
agtgtgttcacccttttccagaccaaaggccaacaatgcttgaagtttacaacaatatgagcaat |
482 |
Q |
| |
|
|||||||| | ||| | | ||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36683801 |
agtgtgttaaacctat---aaaccaaagaccaacaatgcttgaagtttacaacaatttgagcaat |
36683740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University