View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14106_low_3 (Length: 381)

Name: NF14106_low_3
Description: NF14106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14106_low_3
NF14106_low_3
[»] chr1 (3 HSPs)
chr1 (18-374)||(40770865-40771230)
chr1 (46-157)||(20217255-20217366)
chr1 (27-157)||(19287554-19287684)
[»] chr7 (3 HSPs)
chr7 (18-374)||(8331849-8332214)
chr7 (77-206)||(17020856-17020985)
chr7 (18-161)||(14573330-14573473)
[»] chr6 (3 HSPs)
chr6 (30-254)||(19777420-19777644)
chr6 (25-229)||(19785307-19785511)
chr6 (18-207)||(20529171-20529360)
[»] chr4 (3 HSPs)
chr4 (20-224)||(33548792-33548996)
chr4 (20-224)||(26229292-26229495)
chr4 (18-207)||(4254819-4255008)
[»] chr2 (1 HSPs)
chr2 (31-224)||(23961419-23961612)
[»] chr3 (2 HSPs)
chr3 (18-207)||(21897789-21897978)
chr3 (27-114)||(14802891-14802978)
[»] scaffold0014 (1 HSPs)
scaffold0014 (31-217)||(133957-134143)
[»] scaffold0003 (1 HSPs)
scaffold0003 (77-206)||(119049-119178)
[»] chr5 (2 HSPs)
chr5 (76-206)||(143698-143828)
chr5 (76-206)||(18059405-18059535)
[»] scaffold0975 (1 HSPs)
scaffold0975 (21-159)||(3516-3654)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 40771230 - 40770865
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40771230 aatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 40771131  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata 217  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40771130 ttgatgtaaaattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcacata 40771031  T
Q  218 tccatctatcaaggtcaattcatcttgaagttcat------------caataatttggggatctagttcacaaattatctgtgatataattaaaacaatg 305  Q
    |||||||||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  40771030 tccatctatcaaggtcaattcatcttgaagttcatcataaaggtcagcaataattaggggatctagttcacaaataatctgtgatataattaaaacaatg 40770931  T
Q  306 ttagtctaatgacatgaaaaaattgtgcaaaaaatagtgttataagtcgaagtagtaatacctctgtgc 374  Q
    ||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||||    
T  40770930 ttagtctaatgacatgaaaaaattgtgc---aaatattgttataagtcgaagtagtaatacctctgtgc 40770865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 20217255 - 20217366
Alignment:
Q  46 ttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaa 145  Q
    |||||||||||| | |||| |||| | |||| || |||||||| |||||||| ||||||||||||||||| |||| ||| |||||||  ||||| | |||    
T  20217255 ttgttgtagaaccactgaaaattttgatttgaaaaacactattacctaaatacgtgtaagacataagtggatttgttgttatattatagaaattacggaa 20217354  T
Q  146 ttcgtgccaacc 157  Q
    ||||||||||||    
T  20217355 ttcgtgccaacc 20217366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 19287554 - 19287684
Alignment:
Q  27 taacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaa 126  Q
    |||||||||||||  ||| ||| |||||||| || |||||||| | |||| |||  |||||  |||||||||||| ||||||||||||| ||   ||| |    
T  19287554 taacgtggatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcacctaaatatgtgaaagacataagtggattcattgtga 19287653  T
Q  127 tattattaaaatttctgaattcgtgccaacc 157  Q
    ||| || ||||| ||| ||||| ||||||||    
T  19287654 tatgataaaaatctctaaattcatgccaacc 19287684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 8331849 - 8332214
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8331849 aatctatgataacgtggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatttcctaattatgtgtaagacataagtgggt 8331948  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  8331949 ttgatgtaatattataaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtggtattttgttaaattcaacttcatgactattcacata 8332048  T
Q  218 tccatctatcaaggtcaattcatcttgaagttcat------------caataatttggggatctagttcacaaattatctgtgatataattaaaacaatg 305  Q
    |||||||||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  8332049 tccatctatcaaggtcaattcatcttgaagttcatcataaaggtcagcaataattaggggatctagttcacaaataatctgtgatataattaaaacaatg 8332148  T
Q  306 ttagtctaatgacatgaaaaaattgtgcaaaaaatagtgttataagtcgaagtagtaatacctctgtgc 374  Q
    ||||||||||||||| ||||||||||||   ||||| ||||||||||||||||||||||||||||||||    
T  8332149 ttagtctaatgacattaaaaaattgtgc---aaatattgttataagtcgaagtagtaatacctctgtgc 8332214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 17020985 - 17020856
Alignment:
Q  77 gaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 176  Q
    ||||| ||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||  | |||| | || ||||||   ||| || ||||||||     
T  17020985 gaatatactatttcctacatatgtgtaagacattagtggatttgatgtaatattataaaaaaatttgaacttgtcccaaccggttgtaaggattggcatg 17020886  T
Q  177 agtagtattttgttaaattcaacttcatga 206  Q
    ||||    ||||||||||||||||||||||    
T  17020885 agtatagatttgttaaattcaacttcatga 17020856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 14573473 - 14573330
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    ||||||| ||| |||||||||||  | ||||||| ||| |  ||||| || | | |||||||||||||||||| ||||||||| || ||||||| |||      
T  14573473 aatctatgatagcgtggatatttaatggttgttgcagaccatttgaaaatgtcgatttggaatacactatttcttaaatatgtttaggacataattggaa 14573374  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgt 161  Q
    ||  | |||| | || ||| ||| |||| |||||||||||||||    
T  14573373 tttttttaatttgataaaagtttttgaactcgtgccaaccttgt 14573330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 19777644 - 19777420
Alignment:
Q  30 cgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatat 129  Q
    ||||||||||  ||||||| |||||| |   |||| |||||  ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  19777644 cgtggatattcatttgttggtgtagatccggtgaaaatttgaatttggaatgtactatttcctaaatatgtgtaagacataagtaggtttgatataatat 19777545  T
Q  130 tattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaa 229  Q
    ||| || ||||||||||| |||||| ||||   | || |||||||||||||    |||||||||||||||||||||| |||| ||||| |||||||||||    
T  19777544 tataaacatttctgaattggtgccatccttccctaagcattggcattagtatagatttgttaaattcaacttcatgattatttccataaccatctatcaa 19777445  T
Q  230 ggtcaattcatcttgaagttcatca 254  Q
    |||| | |  |||||||||||||||    
T  19777444 ggtccaatgttcttgaagttcatca 19777420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 19785511 - 19785307
Alignment:
Q  25 aataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgt 124  Q
    |||| |||||||||||  | ||||||| ||| |  ||||| || ||| |||||||||||||||||||||||||||| || ||||||| ||   ||| | |    
T  19785511 aatagcgtggatatttaatggttgttgcagaccatttgaaaatgtggatttggaatacactatttcctaaatatgtttaggacataattgaaattgtttt 19785412  T
Q  125 aatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatct 224  Q
    ||| | || ||| ||| |||| ||||||||||||||| | |||||||| ||||| |  ||||||||||||||||||||||||||||| ||||| ||||||    
T  19785411 aatttgataaaagtttttgaactcgtgccaaccttgtttcagtattggtattagcataattttgttaaattcaacttcatgactatttccatacccatct 19785312  T
Q  225 atcaa 229  Q
    |||||    
T  19785311 atcaa 19785307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 20529171 - 20529360
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    |||||||  ||| |||||||||  ||| ||| |||||||| || |||||||| | |||||||||||||||  |||||||||||| ||||||||||||| |    
T  20529171 aatctatggtaatgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacataagtggat 20529270  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac 207  Q
    |  |||| |||| || ||||| ||| ||||  ||||||||    || |||||||| ||    || ||||||||||||||||||| |||||    
T  20529271 tcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac 20529360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 33548996 - 33548792
Alignment:
Q  20 tctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt 119  Q
    ||||| ||| ||||||||||  ||| ||| |||||||| |||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| |||    
T  33548996 tctatgatatcgtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt 33548897  T
Q  120 gatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatc 219  Q
    || || |||| || ||||  |||||||| |||||||||||  || || |||||||| || |  | ||||||||||| ||||| ||||||||| ||||| |    
T  33548896 gaagttatatgataaaaaaatctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccataac 33548797  T
Q  220 catct 224  Q
    |||||    
T  33548796 catct 33548792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 26229495 - 26229292
Alignment:
Q  20 tctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggttt 119  Q
    ||||| ||| ||||||||||  ||| ||| |||||||| |||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| |||    
T  26229495 tctatgatatcgtggatattcattt-ttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggattt 26229397  T
Q  120 gatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatc 219  Q
    || || |||| || ||||  |||||||| |||||||||||  || || |||||||| || |  | ||||||||||| ||||| ||||||||| ||||| |    
T  26229396 gaagttatatgataaaaaaatctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccataac 26229297  T
Q  220 catct 224  Q
    |||||    
T  26229296 catct 26229292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 4254819 - 4255008
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    |||||||  |||||||||||||  ||| ||| |||||||| || |||||||| | |||||||||||||||  |||||||||||| ||||||||||||| |    
T  4254819 aatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacataagtggat 4254918  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac 207  Q
    |  |||| |||| || ||||| ||| ||||  ||||||||    || |||||||| ||    || ||||||||||||||||||| |||||    
T  4254919 tcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac 4255008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 23961419 - 23961612
Alignment:
Q  31 gtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatatt 130  Q
    |||||||||  ||| ||| |||||||| |||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| ||||| |  ||||     
T  23961419 gtggatattcattttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaaggtatatg 23961518  T
Q  131 attaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatct 224  Q
    || ||||  |||||||| ||||||||||| ||| ||||||||||| || |    ||||||||| | ||||| ||||||||| ||||| ||||||    
T  23961519 ataaaaaaatctgaattggtgccaaccttctgtaagtattggcataagcatacatttgttaaactgaacttgatgactatttccataaccatct 23961612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 21897789 - 21897978
Alignment:
Q  18 aatctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggt 117  Q
    |||||||  |||||||||||||  ||| ||| |||||||| || |||||||| | |||||||||||||||  |||||||||||| ||||||||||||| |    
T  21897789 aatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacataagtggat 21897888  T
Q  118 ttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac 207  Q
    |  |||| |||| || ||||| ||| ||||  ||||||||    || |||||||| ||    || ||||||||||||||||||| |||||    
T  21897889 tcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac 21897978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 14802891 - 14802978
Alignment:
Q  27 taacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtg 114  Q
    |||| ||||||||  ||||||| |||||||  |||||||||||   |||||||||  ||||| |||||||||||| ||||||||||||    
T  14802891 taacttggatattcatttgttggtgtagaagcattgaatatttttatttggaatatgctattacctaaatatgtgaaagacataagtg 14802978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 134143 - 133957
Alignment:
Q  31 gtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatatt 130  Q
    |||||||||  ||| ||| |||||||  |||||| |||| | ||||||||  |||||| || ||||||||| ||||||||||||| ||||| || ||||     
T  134143 gtggatattcattttttggtgtagaatcattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaagttatatg 134044  T
Q  131 attaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata 217  Q
    || ||||  | |||||| ||||||||||| ||  |||||| |||| || |    ||||||||||| ||||| |||| |||| |||||    
T  134043 ataaaaaaatatgaattggtgccaaccttctggaagtattagcataagcatacatttgttaaattgaacttgatgattatttccata 133957  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 206
Target Start/End: Original strand, 119049 - 119178
Alignment:
Q  77 gaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcatt 176  Q
    ||||| ||||| ||||| ||||||||||||||| ||||| |||||||||||||||| |||| || |||| | || ||||||   ||| || ||||||||     
T  119049 gaatatactatgtcctacatatgtgtaagacattagtggatttgatgtaatattataaaaaattatgaacttgtcccaaccggttgtaaggattggcatg 119148  T
Q  177 agtagtattttgttaaattcaacttcatga 206  Q
    |  |    ||||||||||||||||||||||    
T  119149 atgatagatttgttaaattcaacttcatga 119178  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 143698 - 143828
Alignment:
Q  76 ggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcat 175  Q
    |||||| ||||||||||| ||||||  ||||||| ||||| |||||||| ||||||| | |||||||||| | || ||||||   | | | |||||||||    
T  143698 ggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccttataattattggcat 143797  T
Q  176 tagtagtattttgttaaattcaacttcatga 206  Q
     || |    ||||||||||||||||||||||    
T  143798 gagcatagatttgttaaattcaacttcatga 143828  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 18059405 - 18059535
Alignment:
Q  76 ggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcat 175  Q
    |||||| ||||||||||| ||||||  ||||||| ||||| |||||||| ||||||| | |||||||||| | || ||||||   | | | |||||||||    
T  18059405 ggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccctataattattggcat 18059504  T
Q  176 tagtagtattttgttaaattcaacttcatga 206  Q
     || |    ||||||||||||||||||||||    
T  18059505 gagcatagatttgttaaattcaacttcatga 18059535  T

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Target: scaffold0975 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0975
Description:

Target: scaffold0975; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 3654 - 3516
Alignment:
Q  21 ctataataacgtggatatttgtttgttgttgtagaactattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttg 120  Q
    |||| ||||||||||||||  ||| |||  ||||||| |||||| ||||   |||||||   ||||||  ||| ||||||| ||||||||||||| ||      
T  3654 ctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataagtggattca 3555  T
Q  121 atgtaatattattaaaatttctgaattcgtgccaacctt 159  Q
    |||| | || || |||||  |||||||||||||||||||    
T  3554 atgttacatgataaaaatccctgaattcgtgccaacctt 3516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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