View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_high_15 (Length: 400)
Name: NF14107_high_15
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 31 - 400
Target Start/End: Complemental strand, 22719405 - 22719037
Alignment:
| Q |
31 |
catatggtccaatctccaggggtgaagcagagacaattgtatgtctaggaatggtctggaaaaatccagacttttgcaacatgcactctaaataataccc |
130 |
Q |
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| T |
22719405 |
catatggtccaatctccaggggttaagcagagacaattgtatgtctaggaatggcatg-aaaaatccagacttttgcaacatgcactctaaataataccc |
22719307 |
T |
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| Q |
131 |
caccatgcgaggttaatatctgatcctaccagagtagacgctgatgttctagaatgaatgtgcgttttagcgagcgacatatggttaaaagacgcaatca |
230 |
Q |
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| T |
22719306 |
caccatgcgaggttaatatctgatcctaccagagtagacgctgatgttctagaatgaatgtgcgttttagcgagcgacatatggttaaaagacgcaatca |
22719207 |
T |
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| Q |
231 |
ttcactaacaaccggtccaggtcctctcggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgt |
330 |
Q |
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| T |
22719206 |
ttcactaacaaccggtccaagtcctctcggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgt |
22719107 |
T |
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| Q |
331 |
atccttcctcaaaatccttggctccaacaccccaaaagtgttgaaatgtttatgccataatcaatatata |
400 |
Q |
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| T |
22719106 |
atccttcctcaaaatccttggctccaacaccccaaaagtgttgaaatgtttatgccataatcaatatata |
22719037 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 36659396 - 36659469
Alignment:
| Q |
282 |
cccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttggctccaa |
357 |
Q |
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| T |
36659396 |
cccttaagcgatgtaaacatc--accacgtgggtgtcgatcctccatgtacccttcctcaaaatccttggccccaa |
36659469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 32079271 - 32079363
Alignment:
| Q |
259 |
ggtaaaggtttgtgacaatgagacccttaagagatgtaaacatgttagcacgcgggtgtcgattctccatgtatccttcctcaaaatccttgg |
351 |
Q |
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||||| |||||||||| ||| || ||||||| | ||||||||| || |||| | |||||||| ||||||||| |||| |||||||||||||| |
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| T |
32079271 |
ggtaagggtttgtgaccatgtgatccttaagcggtgtaaacatcctaacacgtgagtgtcgatcctccatgtacccttactcaaaatccttgg |
32079363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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