View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_high_19 (Length: 346)
Name: NF14107_high_19
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_19 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 37932968 - 37933305
Alignment:
| Q |
9 |
gaagaatatataaatgctgagacatatattatggggtcatcagaccaaccatcaaaaaagaaatctaagaagcaaaagtcttgagtgtgttcttcatttt |
108 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37932968 |
gaagaaaatataaatgccgagacatatattatggggtcatcagaccaaccatcaaaaaagaaatctaagaagcaaaagtcttgagtgtgttcttcatttt |
37933067 |
T |
|
| Q |
109 |
agagatggaatatgtgcacatgtgatgtgaatttaatccataaattttgatccaatatctgtagtccgtaacatgttacttctggtccttatacaatttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37933068 |
agagatggaatatgtgcacatgtgatgtgaatttaatccataaattttgatccaatatctgtagtctgtaacatgttacttctggtccttatacaatttt |
37933167 |
T |
|
| Q |
209 |
cccttcagaatcaatgtcgcacacttgggtatatccaatgtcttcttgagtaacttatgacatacatttgatttatttgctaaatttgttgtactatttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37933168 |
cccttcagaatcaatgtcgcacacttgggtatatccaatgtcttcttgagtaacttatgacatacatttgatttatttgctaaatttgttgtactatttt |
37933267 |
T |
|
| Q |
309 |
gggagttgtggaagtagaattgaaacattttaatcgaa |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37933268 |
gggagttgtggaagtagaattgaaacattttaatcgaa |
37933305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University