View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_high_28 (Length: 277)
Name: NF14107_high_28
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 34730014 - 34729764
Alignment:
| Q |
18 |
tgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34730014 |
tgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttataacttctaatatattttggttccgcagatggaaagcaaca |
34729915 |
T |
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| Q |
118 |
gatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729914 |
gatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcct |
34729815 |
T |
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| Q |
218 |
gcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatgat |
268 |
Q |
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| T |
34729814 |
gcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatgat |
34729764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 34725951 - 34725707
Alignment:
| Q |
23 |
tagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatga |
122 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
34725951 |
tagttaattgcaagtcattcatttcacaatgattcaaattttactgttgtcttctatcttctaatatattttggttctgcagatgggaagcaacagatga |
34725852 |
T |
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| Q |
123 |
gtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaa |
222 |
Q |
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| T |
34725851 |
gtccatttactaattccaagactgctacaaatttagcctggcaaaacatgcacaacagcaagctcccccaagcaaaagattttctcttgaagccttcaaa |
34725752 |
T |
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| Q |
223 |
agacaacgctaacacacaaggtactgtcactatgttttctgatga |
267 |
Q |
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| T |
34725751 |
agacaacattgacacaccaagtactgtcactatgctttctcatga |
34725707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 38610548 - 38610387
Alignment:
| Q |
18 |
tgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaaca |
117 |
Q |
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|||| ||||||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
38610548 |
tgttatagttaattgcaagtcattcatttcgcgatgatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaaca |
38610449 |
T |
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| Q |
118 |
gatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
179 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
38610448 |
gatgagtccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38610387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 38795333 - 38795172
Alignment:
| Q |
18 |
tgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaaca |
117 |
Q |
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|||| ||||||||||||||||||||||||| | || || ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| |
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| T |
38795333 |
tgttatagttaattgcaagtcattcatttcgcgattatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaaca |
38795234 |
T |
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| Q |
118 |
gatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
179 |
Q |
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| T |
38795233 |
gatgagtccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38795172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 34720711 - 34720505
Alignment:
| Q |
23 |
tagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatga |
122 |
Q |
| |
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|||||| || ||| ||||||||||| |||| || || ||||||| ||||||| || ||||||||||| ||| |||| |||||||| ||||||||||||| |
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| T |
34720711 |
tagttacttacaaatcattcatttcacaatcatgcacattttaccgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatga |
34720612 |
T |
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| Q |
123 |
gtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaa |
222 |
Q |
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||||||||| ||||||||||||||| ||||||||||| ||||||||| || |||||| || |||||| | ||||||||||| ||||||| |||||| |
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| T |
34720611 |
atccatttgcctattcaaagactgctataaatttagccttgcaaaacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaa |
34720512 |
T |
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| Q |
223 |
agacaac |
229 |
Q |
| |
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|| |||| |
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| T |
34720511 |
agtcaac |
34720505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 38496083 - 38496163
Alignment:
| Q |
125 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagatttt |
205 |
Q |
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||||||||| | |||||| | || |||||||||| |||| | |||||| |||||||||||||||||| | ||||||||| |
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| T |
38496083 |
ccatttgcttttccaaagaatacttcaaatttagcatggccagacatgcccaacagcaagctcccccaaaccaaagatttt |
38496163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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