View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_high_3 (Length: 530)
Name: NF14107_high_3
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 11759256 - 11759010
Alignment:
| Q |
38 |
tggaagctcctaagtactaactgattctccaacaatct------catcacactcttcaagcgtgctctctcacatgcaacactacttaataacgaactac |
131 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11759256 |
tggaagctactaagtactaactgattctccaacaatctttatctcatcacactcttcaagcgtgctctctcacatgcaacactacttaataacgaactac |
11759157 |
T |
|
| Q |
132 |
tagctcttaattaagtaataacaaataaataaaaataacaactacattcaaacgcaaagcctaactctgtttcaattctccattccatttccaaccatgt |
231 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11759156 |
tagcttttaattaagtaataacaaataaataaaaataactactacattcaaacgcaaagcctaactctgtttcaattctc-----catttccaaccatgt |
11759062 |
T |
|
| Q |
232 |
cactgtttcaatgtcttaattaacaaatccatatcaaagcaattgaacaatg |
283 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
11759061 |
cactgtttcaatttcttaattaacaaaaccatatcaaagcaattaaacaatg |
11759010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 366 - 521
Target Start/End: Complemental strand, 11758931 - 11758776
Alignment:
| Q |
366 |
gaatgtagttatagagtaaactacctcaacaatccaatgaaccattcgtgaacgttgctgaaatacttccgcaaaatccgttgcagagaaatatctttct |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11758931 |
gaatgtagttatagagtaaactacctcaacaatccaatgaaccattcgtgaacgttgctgaaatacttccgcaaaatccgttgcagagaaatatctttct |
11758832 |
T |
|
| Q |
466 |
ccataattccacatgaaagctttccttcgttctctctttctcagcatctggtaact |
521 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11758831 |
ccataattccacatgaaagcttgccttcgttctctctttctcagcatctggtaact |
11758776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University