View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_high_31 (Length: 265)
Name: NF14107_high_31
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_31 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 6489376 - 6489144
Alignment:
| Q |
11 |
agcaaaggcagaaagatgatcattatgataaacaaaaacaacaagtgcagctaataaataaaaacgtgnnnnnnntcctaattttttctcaccagatcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
6489376 |
agcaaaggcagaaagatgatcattatgataaacaaaaacaa---gtgcagctaataaataaaaaggtgaaaaaaatcctaattttttctcaccagatcca |
6489280 |
T |
|
| Q |
111 |
actgcaagaatgcctgattgaggaggattgacaatggcacagaactgtttgactccaaatggccctcccaagttagacaccgtaaatgtacctccctgca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6489279 |
actgcaagaatgcctgattgaggaggattgacaatggcacagaactgtttgactccaaatggccctcccaagttagacaccgtaaatgtacctccctgca |
6489180 |
T |
|
| Q |
211 |
atgtatatcaaccaaacaattcataaactaggacaa |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6489179 |
atgtatatcaaccaaacaattcagaaactaggacaa |
6489144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 25729664 - 25729630
Alignment:
| Q |
186 |
gacaccgtaaatgtacctccctgcaatgtatatca |
220 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
25729664 |
gacatcgtaaatgtacctccctgcaatgtatatca |
25729630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University