View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_high_38 (Length: 214)
Name: NF14107_high_38
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_38 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 31672010 - 31671813
Alignment:
| Q |
1 |
cttattgttgaagtggctaccattgcggaggctgcgaattgtagcccaattgaattgagtccttgtcttggggcaattacttcaaatgcaccaccttcaa |
100 |
Q |
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| T |
31672010 |
cttattgttgaagtggctaccattgcggaggctgcgaattgtagcccaattgaattgagtccttgtcttggggcaattacttcaaatgcaccaccttcaa |
31671911 |
T |
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| Q |
101 |
ctaattgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaagcaatatgttaactctcctggttctaaa |
198 |
Q |
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| T |
31671910 |
ctaattgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaggcaatatgttaactctcctggttctaaa |
31671813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 31659279 - 31659091
Alignment:
| Q |
1 |
cttattgttgaagtggctaccattgcggaggctgcgaattgtagcccaattgaattgagtccttgtcttggggcaattacttcaaatgcaccaccttcaa |
100 |
Q |
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||||| |||||||||||||||||||| |||||| ||||||| ||||| ||||||| || ||| ||||||||||| || ||| | |||||||| |
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| T |
31659279 |
cttatggttgaagtggctaccattgctgaggctcagaattgtgacccaaatgaattgctcccatgtgctggggcaattattttcaattctacaccttcag |
31659180 |
T |
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| Q |
101 |
ctaattgttgctccaaattgagggagcaaaggccatgcttatgtggatacatcaaaaaccctaatttgaagcaatatgttaactctcct |
189 |
Q |
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|| | ||||||||||||||||||||||||| |||||||| |||| |||||||| | |||| ||| | |||||||||||||||||| |
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| T |
31659179 |
ctgaatgttgctccaaattgagggagcaaaccccatgcttctgtgaatacatcagagacccagattacagtcaatatgttaactctcct |
31659091 |
T |
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