View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_high_5 (Length: 508)
Name: NF14107_high_5
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 53562380 - 53561883
Alignment:
| Q |
1 |
ccggcaactttaatcttcccaaactccacctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562380 |
ccggcaactttaatcttcccaaactccacctccaagacaaaaccttgactg----caacagatcctcaacctcaataacagcattattgaaaattctgtc |
53562285 |
T |
|
| Q |
101 |
gttcctcgctttccatatactccaaataacagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562284 |
gttcctcgctttccatatactccaaataacagcatgccaaataattctaacacctttacgggtcttattatttaaaacagctccattccaacattcccac |
53562185 |
T |
|
| Q |
201 |
aaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaataaatgag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53562184 |
aaaataaaaagattcggtggaattataaaattaaagtccaaccattccatgatcttacaccaaaccaccttcaccccttcacaatgaagaaataaatgag |
53562085 |
T |
|
| Q |
301 |
tagcatcttcagccgcgttatt----------cactcataagatgtatccggcgggaaacaattcctaatagctagattaatctttgtaggaattctatc |
390 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
53562084 |
tagcatcttcagccgtgttattacaccacacacactcataagatgtatccggtgggaaacaattcctaatagctagattaatcttcgtaggaattctatc |
53561985 |
T |
|
| Q |
391 |
atagaggagtttccacgagaagacaacgaccttggtc-gcgccggactcttccaaatatgcttaaacaccctcctctctagttcatgaaggctctcttcc |
489 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53561984 |
atggaggagtttccacgagaagacaacgaccttggacggcgccggactcttccaaatatgcttaaacaccctcctctctagttcatcaaggctctcttcc |
53561885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 38185401 - 38185570
Alignment:
| Q |
81 |
gcattattgaaaattctgtcgttcctcgctttccatatactccaaataacagcatgccaaataattccaacacctttacggatcttattatttaaaacag |
180 |
Q |
| |
|
|||||||| ||| || | || ||||| ||||||||||| |||||||| | ||||||||||||| | || || |||| ||||| ||||| |||| | |
|
|
| T |
38185401 |
gcattattaaaagttatatcattcctagctttccatatgctccaaatggcggcatgccaaataagcctcactcccttacaaatctttttattataaaccg |
38185500 |
T |
|
| Q |
181 |
ctccattccaacattcccacaaaataaaaagattcggtggaattataaaattaaagtccaaccattccat |
250 |
Q |
| |
|
||| |||||||||||||||| ||||| ||||||||||||||||||||||| || |||| ||| ||||| |
|
|
| T |
38185501 |
ctcaattccaacattcccacgtgataaacagattcggtggaattataaaattgaattccagccactccat |
38185570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 264
Target Start/End: Original strand, 34821297 - 34821540
Alignment:
| Q |
21 |
aaactccacctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatac |
120 |
Q |
| |
|
|||| ||||||||| |||||||||| | ||||||||||| |||||| || | ||||||||| || ||||| | || ||||||||||||||||| | |
|
|
| T |
34821297 |
aaacaccacctccaccacaaaacctttattgattccaacagtgcctcaaaatctaaaacagcattgttaaaaataatatcattcctcgctttccatatgc |
34821396 |
T |
|
| Q |
121 |
tccaaataacagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtgg |
220 |
Q |
| |
|
||||||| | || |||||||||| | || || ||||| ||||| ||||| ||| || ||||||||||| | ||||| ||||| | |||||| || |
|
|
| T |
34821397 |
tccaaatcgcggcgtgccaaataagcctcactcccttacgaatctttttattgtgaaccgcaccattccaacaattccacatgataaacaaattcggagg |
34821496 |
T |
|
| Q |
221 |
aattataaaattaaagtccaaccattccatgatcttacaccaaa |
264 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||||| ||||| ||||| |
|
|
| T |
34821497 |
gattataatattaatgtctaaccactccatgagcttactccaaa |
34821540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 4903911 - 4903679
Alignment:
| Q |
30 |
ctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaataa |
129 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||| || || | ||| |||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4903911 |
ctccaagacaacaccttaacagattccaacagctcctccacatctgtcacaacattgttgaaaattctgtcattcctcgctttccaaatactccaaattg |
4903812 |
T |
|
| Q |
130 |
cagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaa |
229 |
Q |
| |
|
||||||||||||| | || | |||| | || | ||| || || |||| | ||||||||||||| ||||| |||||| ||||| || ||||||| ||| |
|
|
| T |
4903811 |
cagcatgccaaattaatctaccacccctgcgcagctttttgttcaaaaactcaccattccaacattgccacataataaacagattaggaggaattaaaaa |
4903712 |
T |
|
| Q |
230 |
attaaagtccaaccattccatgatcttacacca |
262 |
Q |
| |
|
|||||| |||||||| ||||| | ||||||||| |
|
|
| T |
4903711 |
attaaattccaaccactccataagcttacacca |
4903679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 1557285 - 1557167
Alignment:
| Q |
132 |
gcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattataaaat |
231 |
Q |
| |
|
||||||||||||| | ||||| || || ||||| ||||| | |||||||||| ||||||||||||||| |||||| ||||| || || |||| ||||| |
|
|
| T |
1557285 |
gcatgccaaataagcctcacacccttccgaatctttttattgacaacagctccaatccaacattcccacataataaacagatttggggggattaaaaaat |
1557186 |
T |
|
| Q |
232 |
taaagtccaaccattccat |
250 |
Q |
| |
|
||||||||| ||| ||||| |
|
|
| T |
1557185 |
taaagtccagccagtccat |
1557167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 22153643 - 22153878
Alignment:
| Q |
27 |
cacctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaa |
126 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
22153643 |
cacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaa |
22153742 |
T |
|
| Q |
127 |
taacagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattat |
226 |
Q |
| |
|
| | ||||||||||| | || | |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| |
|
|
| T |
22153743 |
ttgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaa |
22153842 |
T |
|
| Q |
227 |
aaaattaaagtccaaccattccatgatcttacacca |
262 |
Q |
| |
|
||||||||| |||||||| ||||| | ||||||||| |
|
|
| T |
22153843 |
aaaattaaattccaaccactccataagcttacacca |
22153878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 27 - 262
Target Start/End: Original strand, 22209558 - 22209793
Alignment:
| Q |
27 |
cacctccaagacaaaaccttgacagattccaacagatcctcaacctcaataacagcattattgaaaattctgtcgttcctcgctttccatatactccaaa |
126 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||||| | ||| || || | ||| ||| ||||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
22209558 |
cacctccaagacaacaccttaaaagattccaacagcttctccacatctgtcacaatattgttgaaaattatgtcattcctcgctttccaaatactccaaa |
22209657 |
T |
|
| Q |
127 |
taacagcatgccaaataattccaacacctttacggatcttattatttaaaacagctccattccaacattcccacaaaataaaaagattcggtggaattat |
226 |
Q |
| |
|
| | ||||||||||| | || | |||| || | ||| || || |||| | |||||||||||||||| || |||||| ||||| | || |||| |
|
|
| T |
22209658 |
ttgcggcatgccaaattaatctaccaccccagcgcagctttttgttcaaaaactcaccattccaacattcccgcataataaacagattaagagggattaa |
22209757 |
T |
|
| Q |
227 |
aaaattaaagtccaaccattccatgatcttacacca |
262 |
Q |
| |
|
||||||||| |||||||| ||||| | ||||||||| |
|
|
| T |
22209758 |
aaaattaaattccaaccactccataagcttacacca |
22209793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University