View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_high_9 (Length: 477)
Name: NF14107_high_9
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 39893707 - 39893255
Alignment:
| Q |
18 |
agaatccttaagatcattgacatgaacaatggtgcatacaccaccattgttaaaatccaaattcctaatactcttctcaaggaactgaattctccattta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39893707 |
agaatccttaagatcattgacatgaacaatggtgcaaacaccaccatggttaaaatccaaattcctaatactcttctcaaggaactgaattctccattta |
39893608 |
T |
|
| Q |
118 |
aggaaattatgtctcttctcttcatcagaaaaagtcttgttatacaattccttgttctgaaattcaccatatatgttataacatacagggtgaccttcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39893607 |
aggaaattatgtctcttctcttcatcagaaaaagtcttgttatacaattccttgttctgaaattcaccatatatgttataacatacagggtgaccttcct |
39893508 |
T |
|
| Q |
218 |
tatcaaatccatgcatgtaaaccactttctccaattcatcacccagtttctcatccattaactcctctattccaaattcttttctccagagaattgtgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39893507 |
tatcaaatccatgcatgtaaaccactttctccaattcatcacccagtttctcatccattaactcctctattccaaattcttttctccagagaattgtgtt |
39893408 |
T |
|
| Q |
318 |
cttgatcattgtgaaagcctctttgaccttaaaatctcttgcacgcagaaatttcaacagaattacgtcacttctttcgtcagcaaggagtggtatccca |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39893407 |
cttgatcattgtgaaagcctctttgaccttaaaatctcttgcacgcagaaatttcaacagaattacgtcacttgtttcgtcagcaaggagtggtatccca |
39893308 |
T |
|
| Q |
418 |
taaatggatacttgttcaggtggtaatggcaacgacgcttcatctctctcgac |
470 |
Q |
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| T |
39893307 |
taaatggatacttgttcaggtggtaatggcaatgacgcttcaactttctcgac |
39893255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 44642245 - 44641841
Alignment:
| Q |
18 |
agaatccttaagatcattgacatgaacaatggtgcatacaccaccattgttaaaatccaaattcctaatactcttctcaaggaactgaattctccattta |
117 |
Q |
| |
|
||||| |||||||||||| || |||||||||||||||| ||||||| | |||||||||| ||||| ||||||||||| | || | ||||||||||||| |
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| T |
44642245 |
agaattcttaagatcattaacctgaacaatggtgcatataccaccaggggtaaaatccaatttccttatactcttctccaagaccagaattctccatttc |
44642146 |
T |
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| Q |
118 |
aggaaattatgtctcttctcttcatcagaaaaagtcttgttatacaattccttgttctgaaattcaccatatatgttataacatacagggtgaccttcct |
217 |
Q |
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| ||| | | ||||||||||||||| ||||| || || ||||| | |||||||| | ||| || ||||| || |||||||| |||||||| ||||| | |
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| T |
44642145 |
aagaatctttctctcttctcttcatctgaaaatgttttcttataaacctccttgttatcaaactctccataaatattataacaaacagggtgtccttctt |
44642046 |
T |
|
| Q |
218 |
tatcaaatccatgcatgtaaaccactttctcca---attcatcacccagtttctcatccatt---aactcctctattccaaattcttttctccagagaat |
311 |
Q |
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||||| | |||||||||||||| |||||| | |||||||||| | || ||||| | | ||||| || ||| || ||||||||||| | || |
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| T |
44642045 |
tatcatagccatgcatgtaaacagttttctctaaatattcatcacctaagttttcatctaataacaactcttcgattttgaactcttttctccaacggat |
44641946 |
T |
|
| Q |
312 |
tgtgttcttgatcattgtgaaagcctctttgaccttaaaatctcttgcacgcagaaatttcaacagaattacgtcacttctttcgtcagcaaggagtggt |
411 |
Q |
| |
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|||||||||||||||||||| || ||||| || || || ||||| || || ||||| ||||||||||| ||||| |||| ||||| || ||||||||| |
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| T |
44641945 |
agtgttcttgatcattgtgaatgcttctttcactttgaagtctctggctcggagaaacttcaacagaatcacgtcggttctatcgtctgcgaggagtggt |
44641846 |
T |
|
| Q |
412 |
atccc |
416 |
Q |
| |
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||||| |
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|
| T |
44641845 |
atccc |
44641841 |
T |
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