View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_10 (Length: 458)
Name: NF14107_low_10
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 92 - 441
Target Start/End: Original strand, 11135534 - 11135882
Alignment:
| Q |
92 |
aagtcatggccattatttaaaatataattgtctagtctttataaataacggtttgattaatgcccaatcatactcataacaacaaaatgaactcctttgg |
191 |
Q |
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| T |
11135534 |
aagtcatggccattatt-aaaatataattgtctagtctttataaataacggtttgattaatgtccaatcatactcataacaacaaaatgaactcctttgg |
11135632 |
T |
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| Q |
192 |
tctcacgttgactgctctatgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgt |
291 |
Q |
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| T |
11135633 |
tctcacgttgactgctctatgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgt |
11135732 |
T |
|
| Q |
292 |
ccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgtt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11135733 |
ccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagactgatcctcgcatgcttgctagtctcgtcagacttcactttcatgactgtt |
11135832 |
T |
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| Q |
392 |
ttgttctggtatatactctctccatattcattctttcccatgtcttttgt |
441 |
Q |
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| T |
11135833 |
ttgttctggtatatactctctccatattcattctttcccatgtcttttgt |
11135882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 211 - 397
Target Start/End: Original strand, 11148249 - 11148435
Alignment:
| Q |
211 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccatta |
310 |
Q |
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| T |
11148249 |
tgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattg |
11148348 |
T |
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| Q |
311 |
ttcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
397 |
Q |
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| T |
11148349 |
ttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttc |
11148435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 211 - 397
Target Start/End: Original strand, 11170874 - 11171060
Alignment:
| Q |
211 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccatta |
310 |
Q |
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| T |
11170874 |
tgctgtgtagtagttgtgcttggagggttacccttctcatcaaatgcacaacttgataattccttctatagggacacttgtcctaatgttcattccattg |
11170973 |
T |
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| Q |
311 |
ttcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
397 |
Q |
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| T |
11170974 |
ttcgtgaagtactaagaaatgtttctaagacagatcctcgtatacttgctagtttgataaggcttcacttccatgattgctttgttc |
11171060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 11135440 - 11135514
Alignment:
| Q |
35 |
ccaaaagaaaatgtttgttgctatatattattacaatttgcaacctcaatactttacaagtcatggccattattt |
109 |
Q |
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| T |
11135440 |
ccaaaagaaaatgtttgttgctatatattattacaatttgcaacctcaatactttacaagtcatggccattattt |
11135514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 254 - 397
Target Start/End: Original strand, 11145012 - 11145155
Alignment:
| Q |
254 |
atgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagacagatcctcgtat |
353 |
Q |
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| T |
11145012 |
atgcacaacttaatccatccttttatagcaaaacttgtccaaatgttagttccattgtccgggaagtcataagaaacgtttctaagacagatactcgtat |
11145111 |
T |
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| Q |
354 |
gcttgctagtctcgtcagacttcactttcatgactgttttgttc |
397 |
Q |
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|||||| ||||| || || |||||||| |||||||||||||||| |
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| T |
11145112 |
gcttgcaagtcttgttaggcttcacttccatgactgttttgttc |
11145155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 211 - 296
Target Start/End: Complemental strand, 11192474 - 11192389
Alignment:
| Q |
211 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaa |
296 |
Q |
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| T |
11192474 |
tgctgtgtagtggttgtgcttggagggtttcccttctcttcaaatgcacaacttgatcctaacttctataaggacacatgtccaaa |
11192389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 11154835 - 11154904
Alignment:
| Q |
334 |
tctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttctggtat |
403 |
Q |
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| T |
11154835 |
tctaagacagatcaacgcatgcttgctagcctcgtcaggcttcactttcatgactgttttgttttggtat |
11154904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 11109294 - 11109352
Alignment:
| Q |
211 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatcc |
269 |
Q |
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| T |
11109294 |
tgctgtgtagtggttgtgtttggaggactacccttctcttcaaatgcacaacttgatcc |
11109352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 397
Target Start/End: Complemental strand, 11192357 - 11192288
Alignment:
| Q |
328 |
aacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
397 |
Q |
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| T |
11192357 |
aacgtttctcagacagatcctcgtatccttgccagtttcattaggcttcattttcatgattgttttgttc |
11192288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 11198159 - 11198204
Alignment:
| Q |
216 |
tgtagtggttgttcttggagggttacccttctcctcagatgcacaa |
261 |
Q |
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||||||||||||||||||||||||||| || | |||| |||||||| |
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| T |
11198159 |
tgtagtggttgttcttggagggttacctttgttctcaaatgcacaa |
11198204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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