View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_11 (Length: 455)
Name: NF14107_low_11
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 38246922 - 38247349
Alignment:
| Q |
10 |
cagcacagacacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtca |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38246922 |
cagcccagacacacgccacaagagattttttatcttggggggagatttaatgttccaaattaagtcccaacgaccagatttatgcaaatgaatattgtca |
38247021 |
T |
|
| Q |
110 |
aaaatttcattcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcacagtcaaatgggcagtatg |
209 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247022 |
acaatttcattcatacatattctgtaagcactgcgaacgaaatacctaccattttttcagcctttccaaaccaatttttcacagtcaaatgggcagtatg |
38247121 |
T |
|
| Q |
210 |
ttgatcaaataagttataaattaaaagagcatttcatattctttgctgctctctttcacatcgttcacattcaatgggaaacagtgttacttatctaaac |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38247122 |
ttgatcaaataagttataaattaaaagagcatttcatactctttgctgctctctttcacatcgttcacattcaatgggaaacatggttacttatctaaac |
38247221 |
T |
|
| Q |
310 |
atttctctctcaagtttacattactattatggttttttgggagtttcttcgctgcactctttcacaatgcctccagttcttcttctttcactaatttttt |
409 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38247222 |
atttctctctcaagtttactttactattatggttttttgggagtttcttcgctgctctctttcacaatgcctccagttcttcttctttcactaatttttt |
38247321 |
T |
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| Q |
410 |
ccttcccacagttgttacatggtagaac |
437 |
Q |
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| T |
38247322 |
ccttcccacagttgttacatggtagaac |
38247349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 12223845 - 12223729
Alignment:
| Q |
49 |
gggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgtaagcactgcgaacg |
148 |
Q |
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||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||| | ||| |
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| T |
12223845 |
gggagctttcatgttccaaattaaatcccaacgacccgatttatgcaaatgagtattgtcaacaatttcattcatacatattttgtaagcactacaaaca |
12223746 |
T |
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| Q |
149 |
aaatacctaccattttt |
165 |
Q |
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|||||||||||||||| |
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| T |
12223745 |
gaatacctaccattttt |
12223729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 12226012 - 12225885
Alignment:
| Q |
18 |
acacacgccacaagagattttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttc |
117 |
Q |
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|||||| |||||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| | | ||||| ||||||| ||||||||| |||||| |
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| T |
12226012 |
acacacaccacaagagaatttcgatcttagggggagctttgatgttccaaattaaatcccaacgatccagtttatccaaatgagtattgtcaacaatttc |
12225913 |
T |
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| Q |
118 |
attcatacatattctgtaagcactgcga |
145 |
Q |
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| T |
12225912 |
gttcatacatattctgtaagcactgcga |
12225885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 12223677 - 12223617
Alignment:
| Q |
187 |
ttcacagtcaaatgggcagtatgttgatcaaataagttataaattaaaagagcatttcata |
247 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
12223677 |
ttcacaatcaaatgggtagtatgttgatcaaataagatataaattaaaggagcattccata |
12223617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 9170934 - 9171064
Alignment:
| Q |
35 |
ttttttatcttggggggagctttaatgttccaaattaagtcccaacgaccaaatttatgcaaatgaatattgtcaaaaatttcattcatacatattctgt |
134 |
Q |
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|||||||||||||||| | ||||||||||||||||||| ||||||| ||| |||||||||| ||| ||||||||| |||||| |||||||||||| ||| |
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| T |
9170934 |
ttttttatcttgggggaaactttaatgttccaaattaaatcccaacaacccgatttatgcaagtgagtattgtcaacaatttctttcatacatattatgt |
9171033 |
T |
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| Q |
135 |
aagcactgcgaacgaaatacctaccattttt |
165 |
Q |
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||||| | |||||| ||||| |||||||||| |
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| T |
9171034 |
aagcattacgaacggaatacataccattttt |
9171064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 9171116 - 9171172
Alignment:
| Q |
187 |
ttcacagtcaaatgggcagtatgttgatcaaataagttataaattaaaagagcattt |
243 |
Q |
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||||||||||||| || |||||||||||||||| ||||| |||||||| |||||||| |
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| T |
9171116 |
ttcacagtcaaatcggtagtatgttgatcaaatgagttagaaattaaaggagcattt |
9171172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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