View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_13 (Length: 437)
Name: NF14107_low_13
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 15 - 417
Target Start/End: Complemental strand, 28428624 - 28428213
Alignment:
| Q |
15 |
caaaggacacgtatgctatatggtttgtaaagtttaaatggaaacattttgtaattgattttattttccattaaggccaatgtgattttggcatgtgatt |
114 |
Q |
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| T |
28428624 |
caaaggacacgtatgctatatggtttgtaaagtttaaatggaaacattttgtaattgattttattttccattaaggccaatgtgattttggcatgtgatt |
28428525 |
T |
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| Q |
115 |
aatttgtggactgg-atctcttggagcaattacttttggcttccgtatgtgaaaacagcgtatcaaagcaaaatcaaatcaattctctttggtaaaattg |
213 |
Q |
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| T |
28428524 |
aatttgtggactggaatctcttggagc-attacttttggcttccgtatgtgaaaacagcgtatcaaagcaaaatcaaatcaattctctttggtaaaattg |
28428426 |
T |
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| Q |
214 |
ccttatgttcagatatact------atatga------cattgattgatgtttccataagcttcgagaccaacactaatcatatatgagaattgcttttgt |
301 |
Q |
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| T |
28428425 |
ccttatgttcagatatactccaacactatgagaattgctttgatagatgtgtccataagcttcgagaccaacactaatcatatatgagaattgcttttgt |
28428326 |
T |
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| Q |
302 |
gnnnnnnnncttcttccaaaaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactactgcg |
401 |
Q |
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| T |
28428325 |
gttttttt--ttcttccaaaaa-acacatggaaaatacatttttgcctccgacagaagttaactgtcgttcagtcttttcggctgaagttaactactgcg |
28428229 |
T |
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| Q |
402 |
actcagctgcacttaa |
417 |
Q |
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| T |
28428228 |
actcagctgcacttaa |
28428213 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 397
Target Start/End: Complemental strand, 20807719 - 20807643
Alignment:
| Q |
321 |
aaacacacatggaaaatacgtttttgcctccgatagaagttaactatcgttcagtcttttcggctgaagttaactac |
397 |
Q |
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| T |
20807719 |
aaacacacatggaaaatacgtttttgcctccaacggtggttaactaccgttcagttttttcggcagtagttaactac |
20807643 |
T |
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