View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14107_low_14 (Length: 416)

Name: NF14107_low_14
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14107_low_14
NF14107_low_14
[»] chr6 (6 HSPs)
chr6 (222-400)||(32876451-32876630)
chr6 (18-179)||(32877257-32877418)
chr6 (18-179)||(32880348-32880509)
chr6 (213-364)||(32881116-32881267)
chr6 (177-230)||(32876651-32876704)
chr6 (327-364)||(12501489-12501526)
[»] chr2 (2 HSPs)
chr2 (18-106)||(31760602-31760690)
chr2 (310-362)||(44085272-44085324)
[»] chr4 (1 HSPs)
chr4 (312-364)||(925081-925133)
[»] chr8 (2 HSPs)
chr8 (327-360)||(6806923-6806956)
chr8 (310-362)||(31666011-31666063)
[»] chr5 (2 HSPs)
chr5 (327-364)||(27440494-27440531)
chr5 (327-364)||(38690985-38691022)
[»] chr3 (1 HSPs)
chr3 (327-364)||(40419661-40419698)
[»] scaffold0027 (1 HSPs)
scaffold0027 (312-397)||(5081-5168)
[»] chr7 (1 HSPs)
chr7 (310-350)||(32919013-32919053)
[»] chr1 (1 HSPs)
chr1 (310-350)||(11812385-11812425)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 9e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 222 - 400
Target Start/End: Complemental strand, 32876630 - 32876451
Alignment:
Q  222 ctaagccacgaggaggagaaatcatact-cttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 320  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32876630 ctaagccacgaggaggagaaatcgtactacttaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaagataaatga 32876531  T
Q  321 tagctatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttcttcttctc 400  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32876530 tagttatacaatcattttgtgacaatttttaaacaattttctctgggtcacattatgttcttattatctttctttttctc 32876451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 32877418 - 32877257
Alignment:
Q  18 cttttggctttgcctcattatgctttctttttgaacatgtatttgtggcttgcatatcttctcctaatgacatgttattgtatgatgcattcttcatgga 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32877418 cttttggctttgccccattatgctttctttttgaacatgtatttgtggcttgcatatcttctcctaatgacatgttattgtatgatgcattcttcatgga 32877319  T
Q  118 agttttaacgtcatgagcaaggtctggatttattccctctatgactacattatgtttgctca 179  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32877318 agttttaacgtcaggagcaaggtctggatttattccctctatgactacattatgtttgctca 32877257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 32880348 - 32880509
Alignment:
Q  18 cttttggctttgcctcattatgctttctttttgaacatgtatttgtggcttgcatatcttctcctaatgacatgttattgtatgatgcattcttcatgga 117  Q
    ||||||| |||||| ||||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  32880348 cttttggttttgccccattatgctttctttttaaacatgtacttttggcttgcatatcttctcttagtgacatgttattgtctgatgcattcttcatgga 32880447  T
Q  118 agttttaacgtcatgagcaaggtctggatttattccctctatgactacattatgtttgctca 179  Q
    |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  32880448 agttttaatgtcatgagcaaggtcttgatttattccctatatgactacattatgtttgctca 32880509  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 213 - 364
Target Start/End: Original strand, 32881116 - 32881267
Alignment:
Q  213 ccaactgatctaagccacgaggaggagaaatcatactcttaaaagtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 312  Q
    |||||| |||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32881116 ccaacttatctaagccacggggaggagaaatcgtactcctaaacgtaaatcaatgtttttgaaaattagttgtttcaatgaaagcttaaaaattcaaaag 32881215  T
Q  313 ataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 364  Q
    | ||||||||| |||| || |||||||||| || ||||||||||||||||||    
T  32881216 agaaatgatagttatataaccattttgtgataacttttaaacaattttctct 32881267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 32876704 - 32876651
Alignment:
Q  177 tcaatgttagttttcttattatacataacataatatccaactgatctaagccac 230  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  32876704 tcaaagttagttttcttattatacctaacgtaatatccaactgatctaagccac 32876651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 12501489 - 12501526
Alignment:
Q  327 tacaatcattttgtgacaatttttaaacaattttctct 364  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  12501489 tacaattattttgtgacaatttttaaacaactttctct 12501526  T

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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31760602 - 31760690
Alignment:
Q  18 cttttggctttgcctcattatgctttctttttgaacatgtatttgtggcttgcatatcttctcctaatgacatgttattgtatgatgca 106  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||    
T  31760602 cttttggctttgccccattatgctttctttttgaacatgtatttgcgacttgcatatcttctcctaatgacatgttattgtctgatgca 31760690  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 44085272 - 44085324
Alignment:
Q  310 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 362  Q
    |||||||||||||  |||||||| |||||||||||||||||  ||||||||||    
T  44085272 aagataaatgatatttatacaattattttgtgacaatttttggacaattttct 44085324  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 925133 - 925081
Alignment:
Q  312 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct 364  Q
    |||||||||||  ||||||| ||||||||||||| ||||| ||||||||||||    
T  925133 gataaatgatatttatacaaccattttgtgacaacttttagacaattttctct 925081  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 6806923 - 6806956
Alignment:
Q  327 tacaatcattttgtgacaatttttaaacaatttt 360  Q
    ||||||||||||||||||| ||||||||||||||    
T  6806923 tacaatcattttgtgacaacttttaaacaatttt 6806956  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 31666063 - 31666011
Alignment:
Q  310 aagataaatgatagctatacaatcattttgtgacaatttttaaacaattttct 362  Q
    |||||||||||||  | ||||| ||||||||||||||||||| |||| |||||    
T  31666063 aagataaatgatatatgtacaaccattttgtgacaatttttagacaactttct 31666011  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 27440494 - 27440531
Alignment:
Q  327 tacaatcattttgtgacaatttttaaacaattttctct 364  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  27440494 tacaatcattttgtgacaacttttgaacaattttctct 27440531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 38691022 - 38690985
Alignment:
Q  327 tacaatcattttgtgacaatttttaaacaattttctct 364  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  38691022 tacaattattttgtgacaatttttaaacaactttctct 38690985  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 40419698 - 40419661
Alignment:
Q  327 tacaatcattttgtgacaatttttaaacaattttctct 364  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  40419698 tacaatcattttgtgataatttttagacaattttctct 40419661  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 397
Target Start/End: Original strand, 5081 - 5168
Alignment:
Q  312 gataaatgatagctatacaatcattttgtgacaatttttaaacaattttctct--gggtcacattatgttcttattatctttcttctt 397  Q
    ||||||| |||  |||||||||||||| | |||||||||| |||| |||||||   | |||||||||||| |||| |||| |||||||    
T  5081 gataaattatatttatacaatcattttataacaatttttagacaactttctctcatgttcacattatgtttttatcatctctcttctt 5168  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Complemental strand, 32919053 - 32919013
Alignment:
Q  310 aagataaatgatagctatacaatcattttgtgacaattttt 350  Q
    |||| ||||||||  ||||||||||||||||||||||||||    
T  32919053 aagagaaatgatatttatacaatcattttgtgacaattttt 32919013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 11812385 - 11812425
Alignment:
Q  310 aagataaatgatagctatacaatcattttgtgacaattttt 350  Q
    |||| ||||||||| | ||||||||||||||||||||||||    
T  11812385 aagagaaatgatagttgtacaatcattttgtgacaattttt 11812425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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