View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_15 (Length: 404)
Name: NF14107_low_15
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 37595561 - 37595959
Alignment:
| Q |
16 |
taaaagaaggtattgtttcaataaattaaattgaaaattttgaactacactagatacatagaataatgactctatttctattatatatgtgtactgnnnn |
115 |
Q |
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| T |
37595561 |
taaaagaaggtattgtttcaataaattaaattgaaaattttgaactacactagatacatagaataatgactctatttctattatatatgtgtact-aaaa |
37595659 |
T |
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| Q |
116 |
nnnnnnnnnnntaagagaagacactaattcaacctacatatattatatcatggttt----------------acctaaaaggttttgaagtctctacaac |
199 |
Q |
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| T |
37595660 |
aagaaaaaagataagagaagacactaattcaacctacatatattatatcatggttttaaattgtggtcgacaacctaaaaggttttgaagtctctacaac |
37595759 |
T |
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| Q |
200 |
atcaaaaggtttggagcgaaattgaaccacaatttaaagccatgctacatatataatgtagatgnnnnnnntgaaatttgctctatatttgacctagtgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37595760 |
atcaaaaggtttggagcgaaattgaaccacaatttaaagccatgctacatatataatgtagatgaaaaaaatgaaatttgctctatatttgacctagtgt |
37595859 |
T |
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| Q |
300 |
agtagaaaatgtgaatttaacaaacctgaaaaacattatgtgtagatgttttctgaagttcccttggttcaatagcttgataactttgattcttctctct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37595860 |
agtagaaaatgtgaatttaacaaacctgaaaaacattatgtgtagatgttttctgaagttcccttggttcaatagcttgataactttgattcttctctct |
37595959 |
T |
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