View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_17 (Length: 397)
Name: NF14107_low_17
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 45067148 - 45067513
Alignment:
| Q |
14 |
ataattctcagggaacgcaccagaaaatatctatatcaatcaatggacaattttaaggacttgttaggatactaggatgaggaaatgaaacaaacagaag |
113 |
Q |
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| T |
45067148 |
ataattctcagggaacgcaccagaaaatatctatatcaatcaatggacaattttaaggacttgttaggatactaggatgaggaaatgaaacaaacagaag |
45067247 |
T |
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| Q |
114 |
ccacgataaaagaaaatgcaattattttatatgcatcatcatcataaacacaaaccactttgaatcaatcacctgtgcagatgaaccaaagctcttagag |
213 |
Q |
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| T |
45067248 |
ccacgataaaagaaaatgcaattattttatatgcatcatcatcataaacacaaaccactttgaatcaatcacctgtgcagatgaaccaaagctcttagag |
45067347 |
T |
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| Q |
214 |
ccctgccacacaacttcaagacttttttcatcttttctcttagctctatcttggtaatcaatccgtgcaaagaataatgagtcaaatccaacctatgcca |
313 |
Q |
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| T |
45067348 |
ccctgccacacaacttcaagacttttttcatcttttctcttagctctatcttggtaatcaatccgtgcaaagaataatgagtcaaatccaacctatgcca |
45067447 |
T |
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| Q |
314 |
acaagggtagtgcttaagaaacaagtnnnnnnntgtgtgaaaaaatgaatagacttataggcaaat |
379 |
Q |
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| T |
45067448 |
acaagggtagtgcttaagaaacaagtaaaaaaatgtgtgaaaaaatgaatagacttataggcaaat |
45067513 |
T |
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