View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14107_low_19 (Length: 375)

Name: NF14107_low_19
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14107_low_19
NF14107_low_19
[»] chr5 (4 HSPs)
chr5 (29-375)||(29711799-29712147)
chr5 (9-375)||(29688484-29688847)
chr5 (9-366)||(29696600-29696960)
chr5 (17-139)||(9120354-9120479)
[»] chr8 (3 HSPs)
chr8 (9-156)||(15349463-15349609)
chr8 (69-263)||(4030191-4030382)
chr8 (311-369)||(15349244-15349302)
[»] chr3 (2 HSPs)
chr3 (109-263)||(47451340-47451494)
chr3 (109-153)||(11014934-11014978)
[»] chr4 (11 HSPs)
chr4 (23-148)||(48871142-48871267)
chr4 (23-148)||(48876446-48876571)
chr4 (23-148)||(48886828-48886953)
chr4 (290-371)||(48147334-48147415)
chr4 (282-371)||(49043781-49043870)
chr4 (173-261)||(48903421-48903509)
chr4 (17-73)||(50673467-50673523)
chr4 (311-370)||(48864395-48864454)
chr4 (112-159)||(50666877-50666924)
chr4 (9-73)||(37826333-37826397)
chr4 (302-374)||(48853037-48853109)
[»] chr7 (1 HSPs)
chr7 (176-214)||(30124824-30124862)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 29 - 375
Target Start/End: Original strand, 29711799 - 29712147
Alignment:
Q  29 agatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtc-tgcgt--catcttcttaagcctgatcactgtcaccaccaggaagtgaaagc 125  Q
    |||||| |||||||||||||| |||||||| || ||||| ||||| |  | |||  |||||||||| || ||| ||||||||||| |||||| |||||||    
T  29711799 agatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtttcatcttctta-gcttgaccactgtcaccatcaggaattgaaagc 29711897  T
Q  126 agagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatgctctagcagttgtcctttgtcattatacttggccaatacat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  29711898 agagattctgtatacataaccactagggatccatattcattgtcacagtaggactgatgctctagcagttgtcctttctcattatacttggccaatacat 29711997  T
Q  226 taccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatgactgggaattccatcaaaagacaaaacaagaatcttagt 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  29711998 taccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatggctgggaattccatcaaaagacaaaacaagagtcttagt 29712097  T
Q  326 ccaagaagatgtcacattgtatttttccatcacccatatttcaactgtac 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712098 ccaagaagatgtcacattgtatttttccatcacccatatttcaactgtac 29712147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 375
Target Start/End: Complemental strand, 29688847 - 29688484
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29688847 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtcac 29688748  T
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatgctctagcagttgtcctttgtcatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||| |||||||| |||||    
T  29688747 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcatggtccgagtaggagtgatgctctagcagctgtcctttatcatt 29688648  T
Q  209 atacttggccaatacattaccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatgactgggaattccatcaaaagac 308  Q
    ||||||||||||||||||   | | |  |||||||||||||||||||||||||||   |||||||||||||| || ||| |||||||  || |||||||     
T  29688647 atacttggccaatacatt---atcgtcggttccaacgatatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaa 29688551  T
Q  309 aaaacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtac 375  Q
    | ||| ||| |||| |||||||| |||  |||||||||||||| |||||||||||||||||||||||    
T  29688550 agaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtac 29688484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 29696960 - 29696600
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgc---gtcatcttcttaagcctgatcactgt 105  Q
    ||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| |  |    ||||||||||||| | ||| ||||||    
T  29696960 ataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaacttgaccactgt 29696861  T
Q  106 caccaccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatgctctagcagttgtcctttgtc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||||| ||| |||| |||||||||||    
T  29696860 caccaccaggaattgaaagcagagattctgtatacataaccactggggatacatattgactgtcacagtaggagtgatgttcttgcagctgtcctttgtc 29696761  T
Q  206 attatacttggccaatacattaccagcatttgttccaacgatatcaccactttttgtatcgtatttcggacaaaaataatgactgggaattccatcaaaa 305  Q
    |||||||||||||||| ||  ||     ||| ||||||||||||||||||||||||||| ||||||||| |||||  | |||   ||| | |||||||||    
T  29696760 attatacttggccaatgcacaacgcatgtttcttccaacgatatcaccactttttgtatagtatttcggccaaaaggagtgagcaggattgccatcaaaa 29696661  T
Q  306 gacaaaacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatattt 366  Q
    ||||  |||||| ||||||||||||| |||  |||||||||||||||||||||||||||||    
T  29696660 gacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 9120479 - 9120354
Alignment:
Q  17 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat------tcttgtctgcgtcatcttcttaagcctgatcactgtcacca 110  Q
    |||||| |||||| |||| |||||||||||||| ||||| || ||||||||||      |||||| || ||||||| ||||||| || ||| |||   ||    
T  9120479 atataactataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgt---ca 9120383  T
Q  111 ccaggaagtgaaagcagagattctgtata 139  Q
    ||||| |||||||||||||| ||||||||    
T  9120382 ccagggagtgaaagcagagactctgtata 9120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 9 - 156
Target Start/End: Complemental strand, 15349609 - 15349463
Alignment:
Q  9 ataatactatataatt--ataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtctgcgtcatcttcttaagcctgatcactgtc 106  Q
    ||||||| ||||||||  ||||| ||||  ||||||||||||| |||||  |||||||||||||||||| |||||| || ||||||||||| |||   |     
T  15349609 ataatacaatataattttataaatatcaataaaatggtgaaggagaataactgaaaacctcattcttgtttgcgtcgtcctcttaagcctgctca---tt 15349513  T
Q  107 accaccaggaagtgaaagcagagattctgtatacataaccactagggatc 156  Q
    | ||||||| |||||||||||||| |||||||||||| ||||| ||||||    
T  15349512 atcaccagggagtgaaagcagagactctgtatacatagccacttgggatc 15349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 263
Target Start/End: Original strand, 4030191 - 4030382
Alignment:
Q  69 ttcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcattgt 168  Q
    ||||||| || ||||||||||||||| || ||| ||| ||||   || |||||||||||||| ||||| |||||   |||| | |||||| || |||  |    
T  4030191 ttcttgtttgagtcatcttcttaagcttgctcattgttacca---gggagtgaaagcagagactctgtgtacatggtcacttgagatccaaatccatcat 4030287  T
Q  169 cacagtaggagtgatgctctagcagttgtcctttgtcattatacttggccaatacattaccagcatttgttccaacgatatcaccactttttgta 263  Q
       | ||| || ||||||||||||  ||||||||||||| ||||||  ||||| || ||||| ||| ||||||||  |||||||||||| |||||    
T  4030288 tgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaattcagtaccaccatatgttccaataatatcaccacttattgta 4030382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 15349302 - 15349244
Alignment:
Q  311 aacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 369  Q
    |||||||||||| |||||||||||  |||| ||||||| || |||||||||||||||||    
T  15349302 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 47451340 - 47451494
Alignment:
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatgctctagcagttgtcctttgtcatt 208  Q
    |||| ||||||||||||||||| ||||| |||||||||||| || ||||| ||  || || ||| |||||  ||||||||| ||  ||||||||||||||    
T  47451340 caccgggaagtgaaagcagagactctgtgtacataaccacttggcatccacatggatcgttacaataggaacgatgctctaacaactgtcctttgtcatt 47451439  T
Q  209 atacttggccaatacattaccagcatttgttccaacgatatcaccactttttgta 263  Q
    ||||||  ||||| |  || || ||| ||||||||  ||||||||||||||||||    
T  47451440 atacttaaccaatccggtatcatcatctgttccaataatatcaccactttttgta 47451494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Original strand, 11014934 - 11014978
Alignment:
Q  109 caccaggaagtgaaagcagagattctgtatacataaccactaggg 153  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||    
T  11014934 caccagggagtgaaagcagagactctgtgtacataaccactaggg 11014978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48871267 - 48871142
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48871267 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48871171  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48871170 gaaagcaaagactctgtatagatagccac 48871142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48876571 - 48876446
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48876571 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48876475  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48876474 gaaagcaaagactctgtatagatagccac 48876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 48886953 - 48886828
Alignment:
Q  23 ttataaagatcatgaaaatggtgaaggggaatacttgaaaacctcat---tcttgtctgcgtcatcttcttaagcctgatcactgtcaccaccaggaagt 119  Q
    ||||||| |||| |||||||||||||| ||||| || ||||||||||   |||||| || |||| |||||||| |||| ||| |||   ||||||| |||    
T  48886953 ttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgctcattgt---caccagggagt 48886857  T
Q  120 gaaagcagagattctgtatacataaccac 148  Q
    ||||||| ||| |||||||| ||| ||||    
T  48886856 gaaagcaaagactctgtatagatagccac 48886828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 371
Target Start/End: Original strand, 48147334 - 48147415
Alignment:
Q  290 gggaattccatcaaaagacaaaacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaact 371  Q
    |||||| ||||||| |||||||  |||| ||||||||||||| ||   ||| ||||||| || |||||||||||||||||||    
T  48147334 gggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 49043781 - 49043870
Alignment:
Q  282 taatgactgggaattccatcaaaagacaaaacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaact 371  Q
    |||||| |||||||  |||||| ||| ||||||||| |||||||||| || ||   ||| ||||||| || |||||||||||||||||||    
T  49043781 taatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaact 49043870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 261
Target Start/End: Complemental strand, 48903509 - 48903421
Alignment:
Q  173 gtaggagtgatgctctagcagttgtcctttgtcattatacttggccaatacattaccagcatttgttccaacgatatcaccactttttg 261  Q
    ||||||||||| |||||| |  ||||||||||||||||||||  |||||  | ||||| | |||||||||| ||| |||||| ||||||    
T  48903509 gtaggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtaccatcttttgttccaatgatgtcaccattttttg 48903421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 50673523 - 50673467
Alignment:
Q  17 atataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 73  Q
    ||||||||||||| |||| ||||||||||||||  |||| || ||||||||||||||    
T  50673523 atataattataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattctt 50673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 370
Target Start/End: Complemental strand, 48864454 - 48864395
Alignment:
Q  311 aacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaac 370  Q
    ||||||||||||||||||||| ||   ||| ||||||| || ||||||||||||||||||    
T  48864454 aacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 50666924 - 50666877
Alignment:
Q  112 caggaagtgaaagcagagattctgtatacataaccactagggatccat 159  Q
    ||||||||||||| ||||| ||||||||||| |||||| |||||||||    
T  50666924 caggaagtgaaagtagagactctgtatacatgaccacttgggatccat 50666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 37826333 - 37826397
Alignment:
Q  9 ataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctcattctt 73  Q
    ||||||| ||||||||  ||| |||| |||||||||||||| ||||| ||  |||||||||||||    
T  37826333 ataatacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattctt 37826397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 48853109 - 48853037
Alignment:
Q  302 aaaagacaaaacaagaatcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgta 374  Q
    |||||| | ||||||| ||||||||||||| ||   ||| ||||||| || ||| ||||||||||||||||||    
T  48853109 aaaagaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta 48853037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 30124824 - 30124862
Alignment:
Q  176 ggagtgatgctctagcagttgtcctttgtcattatactt 214  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  30124824 ggagtgatgctctagcagctgtcctttgtcattaaactt 30124862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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