View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14107_low_2 (Length: 559)

Name: NF14107_low_2
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14107_low_2
NF14107_low_2
[»] chr4 (3 HSPs)
chr4 (223-346)||(167262-167384)
chr4 (34-213)||(2306647-2306827)
chr4 (462-545)||(167481-167564)
[»] chr8 (2 HSPs)
chr8 (31-215)||(21538084-21538269)
chr8 (166-215)||(37633313-37633362)
[»] chr7 (1 HSPs)
chr7 (40-215)||(13332658-13332834)
[»] chr1 (2 HSPs)
chr1 (29-215)||(35840678-35840875)
chr1 (29-109)||(41570406-41570487)
[»] chr6 (1 HSPs)
chr6 (136-215)||(4087928-4088006)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 223 - 346
Target Start/End: Original strand, 167262 - 167384
Alignment:
Q  223 atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat 322  Q
    ||||||||||||||||||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  167262 atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat 167360  T
Q  323 caagttatgttcactaagacaatg 346  Q
    | |||||||||||||| |||||||    
T  167361 cgagttatgttcactaggacaatg 167384  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 34 - 213
Target Start/End: Complemental strand, 2306827 - 2306647
Alignment:
Q  34 caatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnn 132  Q
    ||||||||||| |||||||||||| ||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||                        
T  2306827 caatgctattatccacgaatgaaagtaaacgaaaatcacgaattctactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaagaa 2306728  T
Q  133 gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc 213  Q
    || |||||||||||||||||||| || ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2306727 gttgcatttggtggaatacacgctatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc 2306647  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 462 - 545
Target Start/End: Original strand, 167481 - 167564
Alignment:
Q  462 atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc 545  Q
    |||||||||||||   ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  167481 atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc 167564  T

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Target: chr8 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 21538084 - 21538269
Alignment:
Q  31 cagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnn 129  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||                     
T  21538084 cagcaatgctattaaccacgaatgaaaataaacgaaaaccacgaattgtactaaagtgattttcacaaatattattttaatataaaaataaaaaacaaaa 21538183  T
Q  130 nnngtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 215  Q
       |||||||||||||||||||||||||  ||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  21538184 aaagtagcatttggtggaatacacgccagcgtatattgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc 21538269  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
Q  166 tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 215  Q
    |||||||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  37633362 tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc 37633313  T

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Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 13332658 - 13332834
Alignment:
Q  40 tattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaatatnnnnnnnnnnnnnnnnnnnngtagca 138  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||                    ||||||    
T  13332658 tattaaccacgaattaaaataaacgaaaaccacaaattgtactaaagtgattttcacaaacattattttaatataaaaataaaaaacaaaaaaagtagca 13332757  T
Q  139 tttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 215  Q
    |||||||||||||| ||||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13332758 tttggtggaatacaagccatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc 13332834  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 35840678 - 35840875
Alignment:
Q  29 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa---------tgattttcacaaacattattttaatat-nnnnnn 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||         ||||||||||||||||| |||||||||           
T  35840678 atcagcaatgctattaaccacgaatgaaaataaacgaaaaccatgaattgtactaaagtgaaaaagtgattttcacaaacatttttttaatataaaaata 35840777  T
Q  119 nnnnnnnnnnnnnngtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc 215  Q
                  |||||||| ||||||||||| ||||| ||||| | |||||||||||| |||| |||||||||||||||||||| ||||||||||    
T  35840778 aaaaaaaataaaatgtagcattcggtggaatacatgccatcgtatagtataattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc 35840875  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 41570406 - 41570487
Alignment:
Q  29 atcagcaatgctattaaccacgaatgaaaataaaccaaaaccacgaattgtactaaa-tgattttcacaaacattattttaa 109  Q
    ||||||||||||||| |||||||||  ||| |||| ||||| || || ||| ||||| ||||||||||||||||||||||||    
T  41570406 atcagcaatgctattcaccacgaatagaaacaaacgaaaacgacaaactgtgctaaagtgattttcacaaacattattttaa 41570487  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 4088006 - 4087928
Alignment:
Q  136 gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc 215  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| | || ||||||| || |||||||  |||||||    
T  4088006 gcatttggtggaatacacgccatcgtattgtgtaattcgtatttcccttgga-tcagtttagtaggaaatgatatttccc 4087928  T

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