View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_22 (Length: 336)
Name: NF14107_low_22
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 41718924 - 41719226
Alignment:
| Q |
12 |
atgaacaatattcacatcatgtaacaaattaagtttcacnnnnnnnnnnnnnnn-ttccactcatcatattttggaaataaaaaaccttaagtttaacct |
110 |
Q |
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| T |
41718924 |
atgaacaatattcacatcatgtaacaaattaagtttcacaacaacaaaaaaaaagttccactcatcatattttggaaataaaaaaccttaagtttaacct |
41719023 |
T |
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| Q |
111 |
gacatgtatgaagcactgagagagacacggacaccagacacacgttgacaccggannnnnnnnngnnnnnnnttaagtaattgaatgtaatcaaaggcaa |
210 |
Q |
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| T |
41719024 |
gacatgtatgaagcactgagggagacacggacaccagacacacgttgacaccagatttttttttgaaaaaaattaagtaattgaatgtaatcaaaggcaa |
41719123 |
T |
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| Q |
211 |
gttggtgtccgacatgtaacatgtcttccatca-aagtgtcagttctacatcaaaaaacacaatgaacatacagagagaaactaaattaaacatcaaact |
309 |
Q |
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| T |
41719124 |
gttggtgtccgacatgtaac--gtcttccatcagaagtgtcagttctacatcaaaaaacacaatgaacatacggagagaaactaaattaaacattaaact |
41719221 |
T |
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| Q |
310 |
acatt |
314 |
Q |
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| T |
41719222 |
acatt |
41719226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 41718785 - 41718857
Alignment:
| Q |
66 |
ttccactcatcatattttggaaataaaaaaccttaagtttaacctgacatgtatgaagcactgagagagacacg |
139 |
Q |
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|||||||||||||||||||| ||||||||| ||||| |||||| ||||||||| |||||||||||||| ||||| |
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| T |
41718785 |
ttccactcatcatattttggcaataaaaaaacttaa-tttaacttgacatgtacgaagcactgagagacacacg |
41718857 |
T |
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