View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_24 (Length: 315)
Name: NF14107_low_24
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 2624137 - 2624418
Alignment:
| Q |
18 |
ttctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatatatttgcatat |
117 |
Q |
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| T |
2624137 |
ttctcatggtctcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatgtatttgcatat |
2624236 |
T |
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| Q |
118 |
attgggagaatgggccatgaactatgttactattaaatttgcatatatcgatttattcaatatgtagcaaattcaagcatatggtttcttgacttagtcc |
217 |
Q |
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| T |
2624237 |
attgggagaatgggccatgaactatgttactattaaatttgcatatatcgatttattcaatatgtagcaaattcaagcatatggtttcttgacttagtcc |
2624336 |
T |
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| Q |
218 |
caaaatccatatgcaattcatgaagtttcttccattgtaaagaattagtcagatggcgaagttgtccgtcacattttctctc |
299 |
Q |
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| T |
2624337 |
caaaatccatatacaattcatgaagttttttccattgtaaagaattagtcagatgacgaagttgaccgtcacattttctctc |
2624418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 6186267 - 6186185
Alignment:
| Q |
29 |
tcaatcaatggacttagataaacatatatgtcgtatcttggttgtcttagacccaaaatcatcatagataacataatatattt |
111 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||| | | ||| |||||||||| ||||||||||||||||| |
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| T |
6186267 |
tcaatcaatggacttagataaacatctatgtcgttacctggttgatatgggcccgaaatcatcatcgataacataatatattt |
6186185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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