View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_low_28 (Length: 280)
Name: NF14107_low_28
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 37933297 - 37933550
Alignment:
| Q |
1 |
ttaatcgaaactttacttgttttcagtgaatacataaccaatnnnnnnnnnntgttataagataagggtaaatggtttttgttgttgtgaaatatatatt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37933297 |
ttaatcgaaactttacttattttcagtgaatagataaccaataaaaaaaa--tgttataagataagggtaaatggtttttgttgttgtgaaatatatatt |
37933394 |
T |
|
| Q |
101 |
tggtctctgcaatttttcagtttagattcatcaaaattttgaaatggttgtatttggtccccattgcaagtgtcttgtacgtacatgtttttctttactt |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
37933395 |
tggtctctgcaatttttcagtatagattcctcaaaattttgaaatggttgtatttggtcccca-------tgtcttgtacgtccatgtttttctttactt |
37933487 |
T |
|
| Q |
201 |
taagggatggcaaaatacagtgaagctcacacctcaatttccacaggtatcaaccaagggctt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37933488 |
caagggatggcaaaatacagtgaagctcacacctcaatttccacaggtatcaaccaagggctt |
37933550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University