View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14107_low_29 (Length: 278)
Name: NF14107_low_29
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_29 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 49191889 - 49192135
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
49191889 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagagcgacggctttggcag |
49191988 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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|
| T |
49191989 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacttcagcttctctctgattctcaaa |
49192088 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
49192089 |
aaccttcacttcagtcctcactttaattccctccttgtcgccctctc |
49192135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 49202995 - 49203238
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || | |
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|
| T |
49202995 |
ctaaggaactcggctttaagcttctcagtagtagtcaaagcattcatcctttcaacttcaccttgtaactcagcatcccttagagccacggccttcttcg |
49203094 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49203095 |
cctcaacttcagccacctgagccgccttagtccaagctgccttcttcttagccaactcagaattagcctcagccacctcagcctctctctgattctcaaa |
49203194 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcaccct |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203195 |
aaccttcacttcagtcctcactttaattccctccttgtcaccct |
49203238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 49208166 - 49208397
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||| |
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|
| T |
49208166 |
ctaaggaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttcccttagagccacggctttagcag |
49208265 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||||| || ||||||||||||||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
49208266 |
cctcaagctcagccacttgagccgccattgtccaagcagctttcttcttagccaactcggaattagcctcagccacttcagcctctctttgattctcaaa |
49208365 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccct |
251 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
49208366 |
aactttcacttcagtcctcactttaattccct |
49208397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 49188153 - 49188399
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||| || || || || | |
|
|
| T |
49188153 |
ctaagtaaatcagctttaagcttctcagttgtagtcaatgcattcatcctctcgacttcaccttgcaactcagcttcccttagagcaacagccttcttcg |
49188252 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
49188253 |
cctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaa |
49188352 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49188353 |
aaccttcacttcagtcctcactttaattccctccttctcaccctctc |
49188399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 49213006 - 49213246
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||| || || || || | |
|
|
| T |
49213006 |
ctaagtaaatcagctttaagcttctcagttgtagtcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagagccacagccttcttcg |
49213105 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||||| || ||||| || ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49213106 |
cctcaacttcagccacctgagccgccttggtccaagcagccttctttttggccaactccgaattagcctcagccacttcagcctctctctgattctcaaa |
49213205 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcac |
260 |
Q |
| |
|
|| ||||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
49213206 |
tactttcacttcagttctcactttaattccctgcttctcac |
49213246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 26756535 - 26756778
Alignment:
| Q |
23 |
aggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcct |
122 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
26756535 |
aggaactcaggtttaagcttctcagtggtagtcaaagcattcatcctctcaacctcaccttgcaactcagcttccctaagggccacagctttagcagcct |
26756634 |
T |
|
| Q |
123 |
caacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaac |
222 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
26756635 |
caacttcagcgacttgagccgccttagtccaagccgctttcttcttagtcaactcggaattagcctcggccacctcagcctctctcttattctcaaaaac |
26756734 |
T |
|
| Q |
223 |
cttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||| ||| |||||| |
|
|
| T |
26756735 |
cttcacttcagtcctaactttaatttcttccttctcagcctctc |
26756778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 266
Target Start/End: Complemental strand, 32592660 - 32592414
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||| || || |||||||||| |
|
|
| T |
32592660 |
ctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcag |
32592561 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
32592560 |
cttcgacttcagccacttgagccgccttagtccaagccgctttcttcttcgccaactcagaattagactcagccacttcagcctctctttgattctcaaa |
32592461 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
32592460 |
aaccttcacttcagtcctaactctaaatccctccttgtcactctctc |
32592414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 37030664 - 37030910
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| || || || | |
|
|
| T |
37030664 |
ctaaggaactctgctttaagcttttcagtagtagtcaatgcattcatcctctcaacttcaccttgtaactcagcttcccttagtttcacagccttcttcg |
37030763 |
T |
|
| Q |
120 |
cctcaacttcggccacttgagccgccttagtccaagccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaa |
219 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
37030764 |
cctcgacttcagccacctgagccgccttggtccaagccgctttcttcttagccaactcagaattagcttgagccacttcagcctctctttgattctcaaa |
37030863 |
T |
|
| Q |
220 |
aaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37030864 |
aactttcacttcagtcctcactttaattccctccttctcaccctctc |
37030910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 51824717 - 51824920
Alignment:
| Q |
54 |
tcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcagcctcaacttcggccacttgagccgccttagtcca |
153 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| |||||||| |||||||| | || | ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
51824717 |
tcaaagcattcatcttctcaacctcaccttgcaactcagcttcccttagaaccacagatttagcagcctcaacttgagccacttgagcagccttagtcca |
51824816 |
T |
|
| Q |
154 |
agccgctttcttcttagccaattcagaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctcc |
253 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||| |
|
|
| T |
51824817 |
agccgctttcttcatcgccaactcagagttag---------cctcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctcc |
51824907 |
T |
|
| Q |
254 |
ttgtcaccctctc |
266 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
51824908 |
ttgttactctctc |
51824920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 31527306 - 31527409
Alignment:
| Q |
20 |
ctaaggaactcagctttaagcttctcagttgtagtcaaagcattcatcctctcaacttcaccttgtaactcagcatcccttagggcgacggctttagcag |
119 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||| || || |||||||||| |
|
|
| T |
31527306 |
ctaagtaaatcagctttaagcttctcagtagtagtcaaagcattcatcctctcaacctcaccctgcaactcagcttcccttagagccacagctttagcag |
31527405 |
T |
|
| Q |
120 |
cctc |
123 |
Q |
| |
|
|||| |
|
|
| T |
31527406 |
cctc |
31527409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 31527430 - 31527517
Alignment:
| Q |
179 |
gaattagcctcagccacctcagcctctctctgattctcaaaaaccttcacttcagtcctcactttaattccctccttgtcaccctctc |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||| |||||||||||||| ||||| |
|
|
| T |
31527430 |
gaattagcctcagccacttcagcctctctttgattctcaaaaaccttcacttcagtcctaactctaaatccctccttgtcactctctc |
31527517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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