View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_32 (Length: 269)
Name: NF14107_low_32
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 48618504 - 48618741
Alignment:
| Q |
16 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtcta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48618504 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtcta |
48618603 |
T |
|
| Q |
116 |
ttgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttcggaggaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48618604 |
ttgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttcggaggaatt |
48618703 |
T |
|
| Q |
216 |
agggctaaaagaacataatttgccagatgggttcttag |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48618704 |
agggctaaaagaacataatttgccagatgggttcttag |
48618741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 11547062 - 11546825
Alignment:
| Q |
16 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtcta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
11547062 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaaacacaaagccaaaagattctgtggtttatatttcttttgggacta |
11546963 |
T |
|
| Q |
116 |
ttgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttcggaggaatt |
215 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||||||||||| | ||||| | |
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| T |
11546962 |
ttgtgtaccttccacaagaacaagtgaatgaaatagcatatgggttattagattctcaagtatcatttttgtgggtactaaaaccacctcctaaggaagt |
11546863 |
T |
|
| Q |
216 |
agggctaaaagaacataatttgccagatgggttcttag |
253 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||| |
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| T |
11546862 |
agggctaaaagaacatgttttgccaaatgggttcttag |
11546825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 48652951 - 48652714
Alignment:
| Q |
16 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtcta |
115 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| || |
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| T |
48652951 |
aatatccgtggtgattttgttaagagtgatgattgtaatattatagagtggctaaactcaaagacaaaaggttctgtggtttatatttcttttggtactg |
48652852 |
T |
|
| Q |
116 |
ttgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttcggaggaatt |
215 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48652851 |
ttgtgtaccttcctcaagaacaagtgaatgaaatagcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccacctgttaaggaagc |
48652752 |
T |
|
| Q |
216 |
agggctaaaagaacataatttgccagatgggttcttag |
253 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||| |
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| T |
48652751 |
tgggctagagccacatagtttgccagatgggttcttag |
48652714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 48661348 - 48661191
Alignment:
| Q |
42 |
tgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgtacattccacaagaacaagtg |
141 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| | | | ||||||||||| |
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|
| T |
48661348 |
tgatgattctactattatagagtggctaaacacaaagccaaaaggttctgtagtttatatttcttttgggactattgtgaatcatactcaagaacaagtt |
48661249 |
T |
|
| Q |
142 |
aatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaac |
199 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48661248 |
aacgaaattgcatatgggttattgaattctcaagtctcgtttttgtgggtattaaaac |
48661191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 48656399 - 48656239
Alignment:
| Q |
16 |
aatattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtcta |
115 |
Q |
| |
|
||||||||| | ||||||||||||| |||||||| || ||||||||||||||||| | |||||||||||||||||||||||||| |||| |||||| ||| |
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| T |
48656399 |
aatattcgtcgtgattttgttaagactgatgattctactattatagagtggctaaactcaaagccaaaaggttctgtggtttatgtttcctttgggacta |
48656300 |
T |
|
| Q |
116 |
ttgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagt |
176 |
Q |
| |
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||||| | |||| | |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
48656299 |
ttgtgcaacttcctccagaacaagtgaatgaaattgcatatgggttattgaattctcaagt |
48656239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 48666943 - 48666795
Alignment:
| Q |
42 |
tgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgtacattccacaagaacaagtg |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||| |||| |
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| T |
48666943 |
tgatgattgtaatattatagagtggctaaacacaaagccaaaaggttctgtggtttatatttcttttggtactgttgtgtatcttcctcaagaactagtg |
48666844 |
T |
|
| Q |
142 |
aatgaaattgcatatgggttattggattctcaagtatcgtttttgtggg |
190 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
48666843 |
tatgaaatagcatatgggttattggattctcaagtcacatttttgtggg |
48666795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 48585110 - 48584979
Alignment:
| Q |
58 |
atagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgtacattccacaagaacaagtgaatgaaattgcatatg |
157 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| || ||||| | ||||| ||| || | || || ||| ||||||||| |||||||||||| ||| | |
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| T |
48585110 |
atagagtggctagacacaaagccaaaagattccgtagtttacgtctctttcgggactctagtaaactatcctcaagaacaaatgaatgaaattgtatacg |
48585011 |
T |
|
| Q |
158 |
ggttattggattctcaagtatcgtttttgtgg |
189 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |
|
|
| T |
48585010 |
ggttattgaattctcaagtctcgtttttgtgg |
48584979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 48628697 - 48628612
Alignment:
| Q |
16 |
aatattcgtggagattttgttaagag---tgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggttta |
98 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
48628697 |
aatattcgaggtgattttgttaagagcgatgatgattgtagtattatagagtggctacacacaaagccaacaggttctgttgttta |
48628612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 19665861 - 19666050
Alignment:
| Q |
17 |
atattcgtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctat |
116 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | |||||| ||||||||||||||||| |||| |
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| T |
19665861 |
atattcgcggtgattttgttaagagtgatgattgtaatattatagagtggctaaactcaaaggcaaatgattctgttgtttatatttcttttggtactat |
19665960 |
T |
|
| Q |
117 |
tgtgtacattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaaccaccttc |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | || || |||||||||||| ||||||||||||| |
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|
| T |
19665961 |
tgtgtaccttccacaagaacaagtgaatgaaattgcacatgggttattggattctaatgtttcatttttgtgggtactaaaaccaccttc |
19666050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 27227991 - 27227816
Alignment:
| Q |
23 |
gtggagattttgttaagagtgatgattgtaatattatagagtggctaagcacaaagccaaaaggttctgtggtttatatttcttttgggtctattgtgta |
122 |
Q |
| |
|
|||| ||||| ||||||||||||||| | ||||||||||||| ||| | ||| |||| || |||||||| || || || |||||| |||||||| | |
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| T |
27227991 |
gtggtgatttagttaagagtgatgatgattgtattatagagtggttaaactcaaggccacaatcatctgtggtatacatctcatttgggactattgtgca |
27227892 |
T |
|
| Q |
123 |
cattccacaagaacaagtgaatgaaattgcatatgggttattggattctcaagtatcgtttttgtgggtattaaaa |
198 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||||| || ||||| |
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|
| T |
27227891 |
ccttcctcaagaacaagtgaatgaaattgcctatggattattggattctcaagtctcctttttgtggatactaaaa |
27227816 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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