View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_37 (Length: 226)
Name: NF14107_low_37
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_37 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 51740364 - 51740144
Alignment:
| Q |
6 |
ctttgctgctgaaccaacaaccagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaatatgaaggtaatga |
105 |
Q |
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| T |
51740364 |
ctttgctgctgaaccaacgactagaaagtcggcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaatatgaaggtaatga |
51740265 |
T |
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| Q |
106 |
caaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaaagcatttataatgt |
205 |
Q |
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| T |
51740264 |
caaactaagagagttccaccaagcttgcttccaatgctcagcaaaatcaatatgacagtattggttatcatactcaatttcttaaaagcatttataatgt |
51740165 |
T |
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| Q |
206 |
cacattgtaaacccatgtatc |
226 |
Q |
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| T |
51740164 |
cacattgtaaacccatgtatc |
51740144 |
T |
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Back To:
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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 10201008 - 10200886
Alignment:
| Q |
37 |
gcataacctctagtgttcaatataaatccaagaaaaatcccttcacttgtaggaatatgaaggtaatgacaaactaagagagttccaccaagcttgcttc |
136 |
Q |
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| T |
10201008 |
gcatatcctctagtgttcaacatgaagccaagaaaaatcccttcatttgtaggaatatgaaggtaacgacaaactataagagttccgccgagtttgctac |
10200909 |
T |
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| Q |
137 |
caatgctcagcaaaatcaatatg |
159 |
Q |
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| T |
10200908 |
caatgctcaacaagatcaatatg |
10200886 |
T |
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