View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_4 (Length: 519)
Name: NF14107_low_4
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 32863035 - 32863385
Alignment:
| Q |
19 |
gtaaagtcctcctctaaacgtccaaatctttctttaatttgtacatgaataaaataaaatacaagcaaaatcattttggaaagaaacacttgaagcaccc |
118 |
Q |
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| T |
32863035 |
gtaaagtccttctctaaacgtccaaatctttctttaatttgtacatgaataaaataaaatacaagcaaaatcattttggaaagaaacacttgaagcaccc |
32863134 |
T |
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| Q |
119 |
aataatgaatagattcaacacttcaacatcaatgttttggattgatatatgactattgtctatattattcaaagtatataaaatgaaaatcaacaatgga |
218 |
Q |
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| T |
32863135 |
aataatgaatagattcaacacttcaacatcaatgttttggattgatatatgactattgtctatattattcaaagtatataaaatgaaaatcaacaatgga |
32863234 |
T |
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| Q |
219 |
ctgctggctgcggctaggaaattatattatagcaaatttgatactcatttgaaatgaggtacataattagcattgagaaatccacaaataattaatagtc |
318 |
Q |
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| T |
32863235 |
ctgctggctgcggctaggaaattatattatagcaaatttgatactcatttgaaatgaggtacataattagcattgagaaatccacaaataattaatagtc |
32863334 |
T |
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| Q |
319 |
aagtcatgaggaaaataaattaaactcgcatgaactagactttttgggaag |
369 |
Q |
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| T |
32863335 |
aagtcatgaggaaaataaattaaactcgcatgaactagactttttgggaag |
32863385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 32863455 - 32863516
Alignment:
| Q |
445 |
gtccctcaattttttgaaaa-ctttgaggtgaaaagcaaggatggaaaatgagaagtattat |
505 |
Q |
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| T |
32863455 |
gtccctcaattttttgaaaaactttgaggtgaaaagcaaggatggaaaatgagaagtattat |
32863516 |
T |
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