View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14107_low_45 (Length: 202)

Name: NF14107_low_45
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14107_low_45
NF14107_low_45
[»] chr3 (9 HSPs)
chr3 (15-189)||(224790-224964)
chr3 (17-152)||(210345-210480)
chr3 (15-152)||(221893-222030)
chr3 (17-152)||(197070-197205)
chr3 (15-152)||(216948-217085)
chr3 (17-152)||(204988-205123)
chr3 (18-105)||(198274-198361)
chr3 (15-113)||(226108-226206)
chr3 (17-113)||(211665-211761)
[»] chr4 (2 HSPs)
chr4 (17-152)||(6903370-6903505)
chr4 (42-105)||(6904803-6904866)
[»] chr5 (1 HSPs)
chr5 (15-152)||(29838223-29838360)
[»] chr1 (1 HSPs)
chr1 (15-126)||(3808344-3808456)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 2e-75; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 2e-75
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 224964 - 224790
Alignment:
Q  15 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||    
T  224964 atgaagggaattcaaagtttagtgttattatatttgatgtaacttctgttgagatttgctatccactcaaaactccaagtactaatggagaaacaaacac 224865  T
Q  115 caagtgtcctaggcctatgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaagg 189  Q
      |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224864 agagtgtcctagacctacgaaaaggtccagggttgaaatcaattatgctgatgattcaccaagtgaggatgaagg 224790  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 210480 - 210345
Alignment:
Q  17 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 116  Q
    |||||||||||||| ||||  |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  210480 gaagggaattcaaattttagcgttattatatttgatgcaacttctgttgaaatttgctatccattaaaaactccaagtactagtggagaaacaaacaccg 210381  T
Q  117 agtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
    ||||||||||||||||||||||||||| ||||||||    
T  210380 agtgtcctaggcctatgaaaaggtccaaggttgaaa 210345  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 222030 - 221893
Alignment:
Q  15 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 114  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||    
T  222030 atgaaggggattcaaagtttaatgttgttatatttgatgtaacttctgttgagatttgctatccattcaaaactcaaagtattaatggagaaacaaacac 221931  T
Q  115 caagtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
     ||||||| ||| |||| ||||||||||| ||||||||    
T  221930 aaagtgtcatagtcctaggaaaaggtccaaggttgaaa 221893  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 197205 - 197070
Alignment:
Q  17 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 116  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||  || ||||||| ||||||| |    
T  197205 gaagggaattcaaagtttagtgttattatatttgacgtaacttatgttgagatttgttatccattaaaaactccaagtgttaatggagaaccaaacacaa 197106  T
Q  117 agtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
    | ||| |||| |||| ||||||||||| ||||||||    
T  197105 aatgtgctagtcctacgaaaaggtccaaggttgaaa 197070  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 217085 - 216948
Alignment:
Q  15 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 114  Q
    |||||||| |||||||||||| |||  |||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||| | |||||||||||| ||    
T  217085 atgaaggggattcaaagtttagtgtctttatatttgatgcaacttctattgagatttgctatccattcaaaactcaaagtacaaatggagaaacaaaaac 216986  T
Q  115 caagtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
     |||| || ||| |||| ||||||||||| ||||||||    
T  216985 aaagtttcatagtcctaggaaaaggtccaaggttgaaa 216948  T

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Target: chr3; HSP #6
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 204988 - 205123
Alignment:
Q  17 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 116  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||      
T  204988 gaaggaaattcaaagtttagtgttgttatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacac 205087  T
Q  117 agtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
    | |||||||  ||||  ||||| || ||||||||||    
T  205088 aatgtcctactcctagaaaaagttcaagggttgaaa 205123  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 198361 - 198274
Alignment:
Q  18 aagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 105  Q
    ||||||||||||||||||||||| |||||| ||||  |||||||||||||||||  ||| |||| |||||||||||||||| ||||||    
T  198361 aagggaattcaaagtttaatgttgttatatatgatacaacttctgttgagatttcttattcattcaaaactccaagtactaatggaga 198274  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 226206 - 226108
Alignment:
Q  15 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 113  Q
    ||||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| ||||||| ||||||    
T  226206 atgaagggaattcaaagttcaatgttgttatatacgatagaacttctgttgagatttcttatccattccaaactcggaggactaatggagaaccaaaca 226108  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 211761 - 211665
Alignment:
Q  17 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 113  Q
    ||||||||||||||||| |||||| ||||||  |||  |||||||||||||||||  ||||||||  ||||||  || |||| ||||||| ||||||    
T  211761 gaagggaattcaaagttcaatgttgttatatacgatacaacttctgttgagatttcttatccattccaaactcggaggactaatggagaagcaaaca 211665  T

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Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 6903505 - 6903370
Alignment:
Q  17 gaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacacca 116  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||||||| ||||||| |||||||||||| ||      
T  6903505 gaaggaaattcaaagtttagtgttattatatttgatgtaacttcggttgagatttgctatccactcaaaactccgagtactaatggagaaacaaatacac 6903406  T
Q  117 agtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
    | |||||||  ||||  ||||| |||||||||||||    
T  6903405 aatgtcctactcctagaaaaagttccagggttgaaa 6903370  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 6904866 - 6904803
Alignment:
Q  42 ttatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggaga 105  Q
    |||||| ||||  ||||| |||||||||||  |||||||| |||||||||||||||| ||||||    
T  6904866 ttatatatgatccaacttttgttgagatttcttatccattcaaaactccaagtactaatggaga 6904803  T

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Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 29838360 - 29838223
Alignment:
Q  15 atgaagggaattcaaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaacac 114  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |||||| ||  ||||||||||||||| ||||||| |||| ||    
T  29838360 atgaagggaattcaaagtttagtgttattatatttgatgcaacttctgttgaaatttcctatcctttcgaaactccaagtactaatggagaaccaaaaac 29838261  T
Q  115 caagtgtcctaggcctatgaaaaggtccagggttgaaa 152  Q
     || | ||||||  |||  |||||||||| ||||||||    
T  29838260 aaattatcctagttctagaaaaaggtccaaggttgaaa 29838223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 3808456 - 3808344
Alignment:
Q  15 atgaagggaattc-aaagtttaatgttattatatttgatgtaacttctgttgagatttgctatccattaaaaactccaagtactagtggagaaacaaaca 113  Q
    ||||||| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||| | ||||| ||||||    
T  3808456 atgaaggaaattccaaagtttagtgttattatatttgacgtaacttctgttgggatttgctatccgttcaaaactccaagtactaatagagaaccaaaca 3808357  T
Q  114 ccaagtgtcctag 126  Q
    | |||| ||||||    
T  3808356 caaagtatcctag 3808344  T

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