View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14107_low_6 (Length: 484)

Name: NF14107_low_6
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14107_low_6
NF14107_low_6
[»] chr5 (6 HSPs)
chr5 (1-473)||(29712133-29712605)
chr5 (1-207)||(29688295-29688498)
chr5 (30-202)||(29696404-29696576)
chr5 (360-448)||(29696173-29696261)
chr5 (283-450)||(29688073-29688240)
chr5 (166-211)||(42562181-42562226)
[»] chr4 (3 HSPs)
chr4 (34-71)||(48863570-48863607)
chr4 (34-71)||(49040871-49040908)
chr4 (284-324)||(48852757-48852797)
[»] chr1 (6 HSPs)
chr1 (29-68)||(24310521-24310560)
chr1 (289-324)||(24340475-24340510)
chr1 (289-324)||(24352840-24352875)
chr1 (381-423)||(24310163-24310205)
chr1 (34-68)||(24367473-24367507)
chr1 (34-68)||(24416083-24416117)


Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 29712133 - 29712605
Alignment:
Q  1 atatttcaactgtaccattatcatgtgccatatcccatagactgagacatcctctaaatacccataaatcatacactttactaggagcagatgttatatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712133 atatttcaactgtaccattatcatgtgccatatcccatagactgagacatcctctaaatacccataaatcatacactttactaggagcagatgttatatc 29712232  T
Q  101 agctggcaaagtcaactctagaagctccctttgcattaaatgatagccaagaataacattcgttgatatatcataacaaagagccaaccagtgaatagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712233 agctggcaaagtcaactctagaagctccctttgcattaaatgatagccaagaataacattcgttgatatatcataacaaagagccaaccagtgaatagcc 29712332  T
Q  201 ccgtttaagaagtgaatagccccatttaagaacggctctactttggaattttcacgggccaggcaataagagaaataattatcaccctcaatttcgttcc 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712333 ccatttaagaagtgaatagccccatttaagaacggctctactttggaattttcacgggccaggcaataagagaaataattatcaccctcaatttcgttcc 29712432  T
Q  301 acgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaagtaatcatcccttgactc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712433 acgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaagtaatcatcccttgactc 29712532  T
Q  401 gtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagagtttggtatatatttgtga 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29712533 gtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataagagaatttggtatatatttgtga 29712605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 29688498 - 29688295
Alignment:
Q  1 atatttcaactgtaccattatcatgtgc-catatcccatagactgagacatcctctaaatacccataaatcatacactttactaggagcagatgttatat 99  Q
    ||||||||||||||||||||||| |||| ||||||  ||||||||||||||||||| |||| ||||||||||||||||   |||||| ||    |||||     
T  29688498 atatttcaactgtaccattatca-gtgcacatatcaaatagactgagacatcctctgaatagccataaatcatacact---ctaggaccattatttatac 29688403  T
Q  100 cagctggcaaagtcaactctagaagctccctttgcattaaatgatagccaagaataacattcgttgatatatcataacaaagagccaaccagtgaatagc 199  Q
    ||   ||||||| |||||||| ||| | ||||| | |||||||| | |||| |||||||||| ||||| ||||||||  || |||||||||||||||| |    
T  29688402 caataggcaaaggcaactctataagtttcctttccgttaaatgaaatccaacaataacattcattgatctatcataatgaaaagccaaccagtgaataac 29688303  T
Q  200 cccgttta 207  Q
    ||| ||||    
T  29688302 cccattta 29688295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 29696576 - 29696404
Alignment:
Q  30 atatcccatagactgagacatcctctaaatacccataaatcatacactttactaggagcagatgttatatcagctggcaaagtcaactctagaagctccc 129  Q
    |||| |||||||  ||||||||||||| | ||||||||||||||| |  | |||||| ||    |||| |||  |||||||  |||||||||||| | ||    
T  29696576 atatgccatagagcgagacatcctctatacacccataaatcatacgccctgctaggaccattgattatctcatttggcaaacgcaactctagaagtttcc 29696477  T
Q  130 tttgcattaaatgatagccaagaataacattcgttgatatatcataacaaagagccaaccagtgaatagcccc 202  Q
    |||  ||||||||| || ||| |||||||  | |||||||||||| || || |||||||||||||||||||||    
T  29696476 tttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagcccc 29696404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 360 - 448
Target Start/End: Complemental strand, 29696261 - 29696173
Alignment:
Q  360 tcatatgacatggaaagcacgaagtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaat 448  Q
    ||||| ||||| |||| ||| |||||||||||  ||||||||||||||||||||||||| |||| || |||||||  |||| |||||||    
T  29696261 tcataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaat 29696173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 450
Target Start/End: Complemental strand, 29688240 - 29688073
Alignment:
Q  283 caccctcaatttcgttccacgcatcagctctcaatgagaaaagccctaagcgagttaacttatcataagcattgggatcatatgacatggaaagcacgaa 382  Q
    ||||||| ||||| ||||||| || |||||| |||||||||||||| ||| ||| ||||  | ||   ||| | ||||||||  |||| ||||| || |     
T  29688240 caccctccatttccttccacgtattagctcttaatgagaaaagccccaagtgagataacaaaccacgtgcactcggatcatagcacattgaaagaaccag 29688141  T
Q  383 gtaatcatcccttgactcgtcatacccaaaaccatataaatgatatgcatctaaattgcaatcaataa 450  Q
    |||||||||  | ||||| ||||||||||||||||| ||||  | ||| ||||||||| |||||||||    
T  29688140 gtaatcatcagtagactcatcatacccaaaaccatagaaatactttgcttctaaattggaatcaataa 29688073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 42562181 - 42562226
Alignment:
Q  166 atatatcataacaaagagccaaccagtgaatagccccgtttaagaa 211  Q
    ||||||||| || |||||||||||||||||||||||| || |||||    
T  42562181 atatatcatgacgaagagccaaccagtgaatagccccattgaagaa 42562226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 48863607 - 48863570
Alignment:
Q  34 cccatagactgagacatcctctaaatacccataaatca 71  Q
    |||||||||||||| |||||||||||||||||||||||    
T  48863607 cccatagactgagagatcctctaaatacccataaatca 48863570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 49040871 - 49040908
Alignment:
Q  34 cccatagactgagacatcctctaaatacccataaatca 71  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  49040871 cccatagactgagaaatcctttaaatacccataaatca 49040908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 48852797 - 48852757
Alignment:
Q  284 accctcaatttcgttccacgcatcagctctcaatgagaaaa 324  Q
    |||||||||||| ||||| |||| |||||||||||||||||    
T  48852797 accctcaatttctttccatgcattagctctcaatgagaaaa 48852757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 24310560 - 24310521
Alignment:
Q  29 catatcccatagactgagacatcctctaaatacccataaa 68  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  24310560 cataacccatagactgagaaatcctctaaatacccataaa 24310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 24340510 - 24340475
Alignment:
Q  289 caatttcgttccacgcatcagctctcaatgagaaaa 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  24340510 caatttcgttccacgcattagctctcaatgagaaaa 24340475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 24352875 - 24352840
Alignment:
Q  289 caatttcgttccacgcatcagctctcaatgagaaaa 324  Q
    |||||||||||||||||| |||||||||||||||||    
T  24352875 caatttcgttccacgcattagctctcaatgagaaaa 24352840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 423
Target Start/End: Complemental strand, 24310205 - 24310163
Alignment:
Q  381 aagtaatcatcccttgactcgtcatacccaaaaccatataaat 423  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||    
T  24310205 aagtaatcatctcttgactcgtcataaccaaaaccatagaaat 24310163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 24367507 - 24367473
Alignment:
Q  34 cccatagactgagacatcctctaaatacccataaa 68  Q
    |||||||||||||| ||||||||||||||||||||    
T  24367507 cccatagactgagaaatcctctaaatacccataaa 24367473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 24416117 - 24416083
Alignment:
Q  34 cccatagactgagacatcctctaaatacccataaa 68  Q
    |||||||||||||| ||||||||||||||||||||    
T  24416117 cccatagactgagaaatcctctaaatacccataaa 24416083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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