View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_7 (Length: 478)
Name: NF14107_low_7
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_7 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 14905 - 14460
Alignment:
| Q |
17 |
aaaatcaaatgacaaaatatgttctacttggaaatagacagtgtccataataacagcacactagaaaattgcattgacaacttatnnnnnnnnntcaagt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14905 |
aaaatcaaatgacaaaatatgttctacttggaaatagacagtgtccataataacagcacactagaaaattgcattgacaacttataaaaaaaaatcaagt |
14806 |
T |
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| Q |
117 |
aacataacttccgactacattcttctacaatagtgctataaataactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataattta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14805 |
aacataacttccgactacattcttctacaatagtgctataaataactaaaacaaacaatcaacaatgaatatcaaaataacatgaacaacttataattta |
14706 |
T |
|
| Q |
217 |
aactacactatattgactttgaaacaccaattcaaatcaatcttaccacgacactgggacataaaattttcttaatcagctttgagtctccacccatatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14705 |
aactacactatattgactttgaaacaccaattcaaatcaatcttaccacaacactgggacataaaattttcttaatcagctttgactctccacccatatg |
14606 |
T |
|
| Q |
317 |
cagcacgttccatattcttctattaggtgttatcttcgtcaagaatataataaacaaagatttttgccccatttcatcaatgtcaatgtcttcagaagca |
416 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14605 |
cagcacgttccatattcttctattaggtgttatattcgtcaagaatataataaacaaagatttttgccccatttcatcaatgtcaatgtcttcagaagca |
14506 |
T |
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| Q |
417 |
atcactttaaaagtaggcataagtttagtatcatcatcttcgcctt |
462 |
Q |
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| T |
14505 |
atcactttaaaagtaggcataagtttagtatcatcatcttcgcctt |
14460 |
T |
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