View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14107_low_8 (Length: 477)
Name: NF14107_low_8
Description: NF14107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14107_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 34358436 - 34358724
Alignment:
| Q |
16 |
aatatcacccgttgactgacccacaaatatagaaaggaaacnnnnnnnnnnntacaagataaaggaaccaaaatgtttaaaaaggaagaagagaacgatt |
115 |
Q |
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| T |
34358436 |
aatatcacccgttgactgaccaacaaatatagaaaggaaacaaaaaaaaaa-tgcaagataatggaaccaaaatgtttaaaaaggaagaagagaacgatt |
34358534 |
T |
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| Q |
116 |
aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata |
215 |
Q |
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| T |
34358535 |
aatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgata |
34358634 |
T |
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| Q |
216 |
ctcttcaggtaaaccattggcgtttttcctatgagctgtgccatgcaagcagcnnnnnnnntggagattcatcgccgaattgcatgctac |
305 |
Q |
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| T |
34358635 |
ctcttcaggtaaaccattggcgtttttcctatgagttgtgccatgcaagcagcaaaaaaaatggagattcatcaccgaattgcatgctac |
34358724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 70 - 260
Target Start/End: Original strand, 34352854 - 34353040
Alignment:
| Q |
70 |
caagataaaggaaccaaaatgtttaaaaaggaagaagagaacgattaatgttgtcatacacacacatctacctgtctttgacactacaacaaggctccat |
169 |
Q |
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| T |
34352854 |
caagataaagaaaccaaaatgtttaaaaaggaagaagagaacaactaatgctgtcacacacac----ctacctgtctttgacactacaacatggctccat |
34352949 |
T |
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| Q |
170 |
aacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtgccatg |
260 |
Q |
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| T |
34352950 |
aagctcaagcttagcagcaatattagcaactgagcccttagtgatactcttcaggtaaaccattggcgtttttcctatgagctgtaccatg |
34353040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 336 - 459
Target Start/End: Original strand, 34358750 - 34358873
Alignment:
| Q |
336 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctgg |
435 |
Q |
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| T |
34358750 |
tagtgtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctgg |
34358849 |
T |
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| Q |
436 |
tggagctgaaacagtggctgatac |
459 |
Q |
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| T |
34358850 |
tggagctgaaacagtggctgatac |
34358873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 340 - 459
Target Start/End: Original strand, 34353129 - 34353248
Alignment:
| Q |
340 |
gtgtgaaaccgacctgtgtaatatcatcggcaatattgagaacatcgttgctagtttgggattcgacataaacagtggaagacgaaaagatcctggtgga |
439 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
34353129 |
gtgtgaaaccgacctgtgtaatatcatcggcaatattgagatcatcgttgctagtttgggattcgacagagacaatggaagacgaaaagatcctggtgga |
34353228 |
T |
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| Q |
440 |
gctgaaacagtggctgatac |
459 |
Q |
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||||||| |||||||||||| |
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| T |
34353229 |
gctgaaagagtggctgatac |
34353248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 34369011 - 34369126
Alignment:
| Q |
138 |
tacctgtctttgacactacaacaaggctccataacctcaagctttgcagcaatgttagcaactgagcccttagtgatactcttcaggtaaaccattggcg |
237 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| || ||||| | ||| || ||||| ||||||||||| | |
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| T |
34369011 |
tacctgtctttgacactacaacaaggctccataatctcaagcttagcagcaatattagcaacggaaccctttgcgatgctattcagataaaccattggtg |
34369110 |
T |
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| Q |
238 |
tttttcctatgagctg |
253 |
Q |
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|||||||||||||||| |
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| T |
34369111 |
tttttcctatgagctg |
34369126 |
T |
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