View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14108_high_3 (Length: 389)
Name: NF14108_high_3
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 373
Target Start/End: Complemental strand, 43408861 - 43408497
Alignment:
| Q |
11 |
ctcgttcactgctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatttagtttttgttgatttaatcaa |
110 |
Q |
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| T |
43408861 |
ctcgttcaccgctgcttcatatagctcttcaaatacctaattattcattatcatatcatttttagaaacaattttatatagtttttgttgatctaatcaa |
43408762 |
T |
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| Q |
111 |
atccagtactatgatctgatgat---tgtttgct---tacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcag |
204 |
Q |
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| T |
43408761 |
atccagtactatgatctgatgatgattgtttgctaattacctttactgcttgtgggatattcatgttgtgactacttctaaaatcaacagcctgcatcag |
43408662 |
T |
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| Q |
205 |
caaaagatggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagtaacaaacatatatacctcaagagcattagag |
304 |
Q |
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| T |
43408661 |
caaaagatggatccatattcaatctcatgtatgtttctaacatttgttaatttaatttcaagaagaagtaacaaac----atacctcaagagcattagag |
43408566 |
T |
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| Q |
305 |
agatgatcaagttgtggacggtaattgatgagggtttgattggagataacaaactcaataacaccaagg |
373 |
Q |
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| T |
43408565 |
agatgatcaagttgtggacggtaattgatgagggtttgattggagataacaaactcaataacaccaagg |
43408497 |
T |
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