View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14108_high_4 (Length: 359)
Name: NF14108_high_4
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 340
Target Start/End: Original strand, 35433397 - 35433731
Alignment:
| Q |
15 |
caaagggaaatactaactatagcgaccaggttgatcacgaactattcatgat--gtctatttttcttattaccctgccctacttttaatattttactaac |
112 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35433397 |
caaagggaaatactaactatagggatcaggttgatcacgaattattcatgatatgtctatttttcttattaccctgccctacttttaatattttaccaac |
35433496 |
T |
|
| Q |
113 |
catgattgaagtccagcaaaagatcctacggatgaaagtgattcgtgaaattttcgaagcgtattttgtcggaacaaatagcataacttttaaataaagt |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35433497 |
catgattccagtccagcaaaagatcctacgggtcaaattgattcgtgaaattttcgaggcgtgttttgtcggaacaaatagcataacttttaaataaagt |
35433596 |
T |
|
| Q |
213 |
gtttaaatctttgtatccatccaaaaattatcataaaagat------ttgaacactttaagtttatgtccttaaggacatagagctcttttatcatc-aa |
305 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35433597 |
gtttaaatcttcgtattcatccaaaaattatcataaaagatttgaagttgaacactttaagtttatgtccttaaggacatagagctcttttatcatcaaa |
35433696 |
T |
|
| Q |
306 |
attcaaatatgaattcttacttaaggagaactaag |
340 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35433697 |
atttaaatatgaattcttacttaaggagaactaag |
35433731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 32556137 - 32556219
Alignment:
| Q |
79 |
tattaccctgccctacttttaatattttactaaccatgattgaagtccagcaaaagatcctacggatgaaagtgattcgtgaa |
161 |
Q |
| |
|
||||||||||||| ||||||||||| |||| | |||||||| |||||||||||| ||| ||||| | | ||||||||||||| |
|
|
| T |
32556137 |
tattaccctgccccacttttaatatattaccacccatgatttcagtccagcaaaaaatcatacggctcacagtgattcgtgaa |
32556219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University