View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14108_high_7 (Length: 320)

Name: NF14108_high_7
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14108_high_7
NF14108_high_7
[»] chr8 (2 HSPs)
chr8 (114-303)||(33167907-33168096)
chr8 (1-49)||(33167794-33167842)
[»] chr4 (10 HSPs)
chr4 (114-297)||(8898863-8899047)
chr4 (141-297)||(36614440-36614597)
chr4 (7-49)||(31371187-31371229)
chr4 (218-295)||(26492906-26492983)
chr4 (5-49)||(36614311-36614355)
chr4 (248-293)||(10286077-10286122)
chr4 (17-49)||(10285852-10285884)
chr4 (118-289)||(31371292-31371464)
chr4 (211-297)||(21277082-21277168)
chr4 (17-46)||(15154989-15155018)
[»] chr1 (5 HSPs)
chr1 (115-297)||(45963024-45963207)
chr1 (222-297)||(12789060-12789135)
chr1 (7-46)||(12789311-12789350)
chr1 (7-45)||(37627951-37627990)
chr1 (217-297)||(17734719-17734799)
[»] chr3 (11 HSPs)
chr3 (164-296)||(8890852-8890985)
chr3 (176-274)||(12881743-12881842)
chr3 (205-297)||(11271749-11271841)
chr3 (130-257)||(4285255-4285384)
chr3 (4-49)||(4285463-4285508)
chr3 (184-297)||(31139044-31139158)
chr3 (208-293)||(4847242-4847327)
chr3 (12-49)||(4853885-4853922)
chr3 (12-49)||(4875618-4875655)
chr3 (189-264)||(4853686-4853762)
chr3 (189-264)||(4875420-4875496)
[»] chr2 (2 HSPs)
chr2 (166-297)||(24184930-24185062)
chr2 (7-45)||(8172336-8172374)
[»] chr5 (3 HSPs)
chr5 (214-297)||(1589666-1589749)
chr5 (207-297)||(26266797-26266887)
chr5 (3-45)||(16766029-16766071)
[»] scaffold0007 (1 HSPs)
scaffold0007 (214-297)||(215454-215537)
[»] chr7 (3 HSPs)
chr7 (5-48)||(10235257-10235300)
chr7 (219-297)||(9046546-9046624)
chr7 (213-297)||(10235011-10235097)
[»] chr6 (1 HSPs)
chr6 (248-297)||(31817509-31817558)
[»] scaffold1485 (2 HSPs)
scaffold1485 (12-49)||(1076-1113)
scaffold1485 (189-264)||(1235-1311)
[»] scaffold0179 (1 HSPs)
scaffold0179 (5-46)||(30492-30533)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 114 - 303
Target Start/End: Original strand, 33167907 - 33168096
Alignment:
Q  114 gcgtcatgggatcgacgtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataagtgttct 213  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33167907 gcgtcatgggatcgaggtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataagtgttct 33168006  T
Q  214 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgagagcctat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33168007 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcttattttcatggtcgattatcattgagagcctat 33168096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33167794 - 33167842
Alignment:
Q  1 acagggagttaaagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33167794 acagggagttaaagtaattaccaatctaatttttagttttgattagctg 33167842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 297
Target Start/End: Complemental strand, 8899047 - 8898863
Alignment:
Q  114 gcgtcatgggatcgacgtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataag-tgttc 212  Q
    |||||||||||| || | ||| ||| |||||||||||| |  ||||| | ||||||||||| |||| ||||||||||||||||| ||||| ||  | |||    
T  8899047 gcgtcatgggattgatggtttcatcataatgtcaaatctttaacattccctatctatttctctattttataatgaattcatttctaaggacaatatattc 8898948  T
Q  213 tttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||||||||||| |||| ||||  ||||| ||||||||| ||||||||||||||  ||||| || |||||||||||||||||||    
T  8898947 tttggtatttcatatttcctctcccaatacatgaatgtatctcaacaataatcaacactattctcttggtcgattatcattgaga 8898863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 297
Target Start/End: Original strand, 36614440 - 36614597
Alignment:
Q  141 aatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataa-gtgttctttggtatttcatgtttcatctcggaa 239  Q
    |||||||||| ||| ||||||| ||||||||| | |||| |||  | |||||| ||| ||||| || |||||||||||||||| |||||| || || |||    
T  36614440 aatgtcaaattctatacatttcttatctatttttctattttatgctaaattcaattctaaggacaatgtgttctttggtattttatgttttatttcagaa 36614539  T
Q  240 tacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||  | || |||| |||| ||||||||||  |||| ||||||| ||||||||||||||    
T  36614540 tatttaaacgtatctcaataataatcaagtatattctcatggttgattatcattgaga 36614597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 31371187 - 31371229
Alignment:
Q  7 agttaaagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  31371187 agttaaagtaattatcaatctaatttttagttttgattagctg 31371229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 26492906 - 26492983
Alignment:
Q  218 tatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattga 295  Q
    ||||||||||||| | ||||||||| |||| |||| |||| ||||| ||| |||||| ||||||| ||||||||||||    
T  26492906 tatttcatgtttcttttcggaatacatgaacgtatttcaataataaccaaacctattctcatggttgattatcattga 26492983  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 36614311 - 36614355
Alignment:
Q  5 ggagttaaagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||| |||||||||||||||||||||||| |||||||||||||    
T  36614311 ggagttgaagtaattaccaatctaatttttaattttgattagctg 36614355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 10286077 - 10286122
Alignment:
Q  248 tgtatatcaacaataatcaagcctattttcatggtcgattatcatt 293  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||    
T  10286077 tgtatctcaataataatcaagcctattttcatggttgattatcatt 10286122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 10285852 - 10285884
Alignment:
Q  17 attaccaatctaatttttagttttgattagctg 49  Q
    |||||||||||||||||||||||||||||||||    
T  10285852 attaccaatctaatttttagttttgattagctg 10285884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 289
Target Start/End: Original strand, 31371292 - 31371464
Alignment:
Q  118 catgggatcgacgtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataa-gtgttctttg 216  Q
    |||||||| || ||||| ||| |||||| ||||| | |||||| | ||||||||||| |||| ||||| || ||| |||  ||||| || |||||||| |    
T  31371292 catgggattgaggttttcatcataatgttaaatcattgacattccctatctatttctctattttataaggagttcttttttaaggacaatgtgttcttag 31371391  T
Q  217 gtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattat 289  Q
    ||||||||| |||  ||||  ||||| ||||| ||| |||| | ||||||| | |||| | ||||| ||||||    
T  31371392 gtatttcatattttctctctaaatacatgaatctatctcaatagtaatcaaacttattcttatggttgattat 31371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 21277168 - 21277082
Alignment:
Q  211 tctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||| ||||||| ||||||| | || |||||| | ||||||| |||| ||  |||||||||||||| ||||| |||||| |||||||    
T  21277168 tcttaggtattttatgtttcctttcagaatacataaatgtatctcaataacgatcaagcctatttttatggttgattattattgaga 21277082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 15155018 - 15154989
Alignment:
Q  17 attaccaatctaatttttagttttgattag 46  Q
    ||||||||||||||||||||||||||||||    
T  15155018 attaccaatctaatttttagttttgattag 15154989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 297
Target Start/End: Complemental strand, 45963207 - 45963024
Alignment:
Q  115 cgtcatgggatcgacgtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataag-tgttct 213  Q
    ||||||||||| || ||||| ||| |||||| ||||| || |||||    |||||||||| |||| ||||||||||| ||| | ||||| ||| ||||||    
T  45963207 cgtcatgggattgaagttttcatcataatgttaaatcttaaacattctccatctatttctctattttataatgaatttattcctaaggacaaggtgttct 45963108  T
Q  214 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||| |||  |||||||  |||||||||||||    
T  45963107 ttggtatttcatgtttcatctcaaaatacatgaatgtatctcaacaataatcaagcttatcctcatggtttattatcattgaga 45963024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 297
Target Start/End: Complemental strand, 12789135 - 12789060
Alignment:
Q  222 tcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||||||| |||| |||||   ||| |||| ||||||||||||| ||||||| ||| ||| ||||||||||||||    
T  12789135 tcatgtttcctctcagaatatacgaacgtatctcaacaataatcatgcctattctcaaggttgattatcattgaga 12789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 12789350 - 12789311
Alignment:
Q  7 agttaaagtaattaccaatctaatttttagttttgattag 46  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  12789350 agttgaagtaattaccaatctaatttttaattttgattag 12789311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 37627990 - 37627951
Alignment:
Q  7 agttaaagtaatt-accaatctaatttttagttttgatta 45  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  37627990 agttaaagtaatttaccaatctaatttttagttttgatta 37627951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 17734719 - 17734799
Alignment:
Q  217 gtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||||||||||||| | || |||||| ||||||||| | || || ||||||||||||| | ||||  |||||| |||||||    
T  17734719 gtatttcatgtttcctttcagaatacatgaatgtatcttaataacaatcaagcctattattatggatgattattattgaga 17734799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 164 - 296
Target Start/End: Complemental strand, 8890985 - 8890852
Alignment:
Q  164 tatctatttctatattctataatgaattcatttcaaaggataa-gtgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaata 262  Q
    ||||||||||| |||| ||||||||||||||||| ||||| || ||||||||||||| |||||||||| ||||  ||| | ||||||||| |||||||||    
T  8890985 tatctatttctctattttataatgaattcatttctaaggacaacgtgttctttggtaattcatgtttcctctcataattcatgaatgtatctcaacaata 8890886  T
Q  263 atcaagcctattttcatggtcgattatcattgag 296  Q
    |  ||||||||| ||||||| |||||||||||||    
T  8890885 actaagcctattctcatggttgattatcattgag 8890852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 176 - 274
Target Start/End: Complemental strand, 12881842 - 12881743
Alignment:
Q  176 tattctataatgaattcatttcaaaggataa-gtgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctatt 274  Q
    |||||||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||  ||||| ||||||||| |||| ||||| ||||| ||||    
T  12881842 tattctataatgaattcatttctaaggaaaatgtgttctttggtatttcatgtttcctctcaaaatacatgaatgtatctcaataataaccaagcttatt 12881743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 11271841 - 11271749
Alignment:
Q  205 aagtgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||||||||||||||||| ||||||| | |  |||||  | ||||||| |||| ||||||||||| |||| ||||||| ||||||||||||||    
T  11271841 aagtgttctttggtattttatgtttccttttagaatatataaatgtatctcaataataatcaagcttattctcatggttgattatcattgaga 11271749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 257
Target Start/End: Complemental strand, 4285384 - 4285255
Alignment:
Q  130 gtttttatcgtaatgtcaaatcctagacatttcatatctatttctatattctataatgaattcatttcaaaggataa-gtgttc-tttggtatttcatgt 227  Q
    ||||| ||| |||||| |||||||   |||| | ||||||||||| |||||||||||||||| ||||| ||| | || | |||| |||| ||||||||||    
T  4285384 gttttcatcataatgttaaatccttagcattccctatctatttctttattctataatgaattaatttctaagtacaaggagttcatttgatatttcatgt 4285285  T
Q  228 ttcatctcggaatacgtgaatgtatatcaa 257  Q
    ||| ||||| ||||| ||||||||| ||||    
T  4285284 ttcctctcgaaatacatgaatgtatctcaa 4285255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 4285508 - 4285463
Alignment:
Q  4 gggagttaaagtaattaccaatctaatttttagttttgattagctg 49  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  4285508 gggagttaaagcaattaccaatctaatttttagttttaattagctg 4285463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 297
Target Start/End: Original strand, 31139044 - 31139158
Alignment:
Q  184 aatgaattcatttcaaaggataag-tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggt 282  Q
    |||||||||||||| ||||| ||  ||||||||||||||| ||||||  | ||  ||||| | || |||| |||| ||||||||||| |||| |||| ||    
T  31139044 aatgaattcatttctaaggacaaaatgttctttggtattttatgttttctttcataatacataaacgtatctcaataataatcaagcttattctcatagt 31139143  T
Q  283 cgattatcattgaga 297  Q
     ||||| ||||||||    
T  31139144 tgattaccattgaga 31139158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Complemental strand, 4847327 - 4847242
Alignment:
Q  208 tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcatt 293  Q
    ||||||||| ||||||||||||| | || || ||| ||||||||| |||||| |||| || |||||| |||| || ||| ||||||    
T  4847327 tgttctttgatatttcatgtttcctatcagattacatgaatgtatctcaacagtaattaaacctattctcatagttgataatcatt 4847242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 4853922 - 4853885
Alignment:
Q  12 aagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  4853922 aagtaaatactaatctaatttttagttttgattagctg 4853885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 4875655 - 4875618
Alignment:
Q  12 aagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  4875655 aagtaaatactaatctaatttttagttttgattagctg 4875618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 4853762 - 4853686
Alignment:
Q  189 attcatttcaaaggataag-tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataat 264  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||| | |  || ||| ||||||||| |||||| ||||    
T  4853762 attcatttctaaggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 4853686  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 4875496 - 4875420
Alignment:
Q  189 attcatttcaaaggataag-tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataat 264  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||| | |  || ||| ||||||||| |||||| ||||    
T  4875496 attcatttctaaggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 4875420  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 297
Target Start/End: Original strand, 24184930 - 24185062
Alignment:
Q  166 tctatttctatattctataatgaattcatttcaaaggataag-tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataat 264  Q
    ||||||||  |||| ||||||||||||||||  ||||| ||| |||||||||||||||||| ||||  ||| |||||| ||||| ||| |||||||||||    
T  24184930 tctatttcgctattttataatgaattcatttataaggacaaggtgttctttggtatttcatatttccactcagaatacatgaatatatctcaacaataat 24185029  T
Q  265 caagcctattttcatggtcgattatcattgaga 297  Q
    |||||||||| ||||||| ||||||||||||||    
T  24185030 caagcctattctcatggttgattatcattgaga 24185062  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 8172336 - 8172374
Alignment:
Q  7 agttaaagtaattaccaatctaatttttagttttgatta 45  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  8172336 agttaaagtaattatcaatctaatttttagttttgatta 8172374  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 297
Target Start/End: Original strand, 1589666 - 1589749
Alignment:
Q  214 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||||| ||||||||| ||||  ||||| |||| |||| |||||||||||||||  |||||||||||| ||||||||||||||    
T  1589666 ttggtatatcatgtttcctctcataatacatgaacgtatctcaacaataatcaagtttattttcatggttgattatcattgaga 1589749  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 26266887 - 26266797
Alignment:
Q  207 gtgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||||||| |||||| ||||||| | |  |||||| | ||||||| |||| ||||||||||  |||| ||||||| ||||||||||||||    
T  26266887 gtgttctttcgtattttatgtttcctttgagaatacataaatgtatctcaataataatcaagtttattctcatggttgattatcattgaga 26266797  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 16766029 - 16766071
Alignment:
Q  3 agggagttaaagtaattaccaatctaatttttagttttgatta 45  Q
    ||||||||  ||| |||||||||||||||||||||||||||||    
T  16766029 agggagttttagtgattaccaatctaatttttagttttgatta 16766071  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 297
Target Start/End: Complemental strand, 215537 - 215454
Alignment:
Q  214 ttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||||||  |||||||| ||||||||||| |||| |||| |||||||| |||| ||||||| ||||||| || |||| ||||||    
T  215537 ttggtataacatgtttcctctcggaatacatgaacgtatctcaacaatcatcacgcctattctcatggttgaatatcgttgaga 215454  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 10235300 - 10235257
Alignment:
Q  5 ggagttaaagtaattaccaatctaatttttagttttgattagct 48  Q
    |||||| |||| ||||||||||||||||||||||||||||||||    
T  10235300 ggagtttaagtgattaccaatctaatttttagttttgattagct 10235257  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 9046624 - 9046546
Alignment:
Q  219 atttcatgtttcatctcggaatacgtgaatgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||||||||||| | || |||||| ||||||||| ||||  |||||||||| |||| ||||| | ||||||||||||||    
T  9046624 atttcatgtttcctttcagaatacatgaatgtatctcaatgataatcaagcttattctcatgattgattatcattgaga 9046546  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 10235097 - 10235011
Alignment:
Q  213 tttggtatttcatgtttcatctcggaatacgtgaatgtatatc--aacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    |||||||||||||||||| || || ||||| ||||||||| ||  || |||| |||||| ||||||| |||| ||||||| ||||||    
T  10235097 tttggtatttcatgtttcctcccgtaatacatgaatgtatctcaaaataatagtcaagcttattttcgtggttgattatcgttgaga 10235011  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 31817509 - 31817558
Alignment:
Q  248 tgtatatcaacaataatcaagcctattttcatggtcgattatcattgaga 297  Q
    ||||| |||| |||||||||||||||| ||||||| ||||||||||||||    
T  31817509 tgtatctcaataataatcaagcctattctcatggttgattatcattgaga 31817558  T

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Target: scaffold1485 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold1485
Description:

Target: scaffold1485; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 1076 - 1113
Alignment:
Q  12 aagtaattaccaatctaatttttagttttgattagctg 49  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  1076 aagtaaatactaatctaatttttagttttgattagctg 1113  T

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Target: scaffold1485; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 1235 - 1311
Alignment:
Q  189 attcatttcaaaggataag-tgttctttggtatttcatgtttcatctcggaatacgtgaatgtatatcaacaataat 264  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||| | |  || ||| ||||||||| |||||| ||||    
T  1235 attcatttctaaggacaagatgttctttggtatttcatgtttcctataagattacatgaatgtatctcaacagtaat 1311  T

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Target: scaffold0179 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 30533 - 30492
Alignment:
Q  5 ggagttaaagtaattaccaatctaatttttagttttgattag 46  Q
    ||||||||| |||||| |||| ||||||||||||||||||||    
T  30533 ggagttaaaataattatcaatataatttttagttttgattag 30492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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