View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14108_low_1 (Length: 450)
Name: NF14108_low_1
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 42536098 - 42536539
Alignment:
| Q |
1 |
ataggttttattgtttcttctcaggcttcattgtaagcattatttttcttgtgattgttgcctaccatcctttagttgtttaaccagttatagagtgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42536098 |
ataggttttattgtttcttctcaggcttcattgtaagcattatttgtcttgtgattgttgcctaccatcctttagttgtttaaccagttatagagtgaac |
42536197 |
T |
|
| Q |
101 |
ttgtttagggaaaatttttatgcatgcttttctttcactcttgagtattttgggtgatatgagacatcttacttgtattattagtagtacttttttcatc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42536198 |
ttgtttagggaaattttttatgcatgcttttctttcactcttgagtattttgggtgatatgagacatcttacttgtattattagtagtacttttttcatc |
42536297 |
T |
|
| Q |
201 |
ctgaaattctgaggtgattatgtgggatattgtgacagaagttcaaatatttgttcagaaattggagggtatgttactcaattatcatgcaaaatataac |
300 |
Q |
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| T |
42536298 |
ctgaaattctgaggtgattatgtgggatattgtgacagaagttcaaatatttgttcagaaattggagggtatgttactcaattatcatgcaaaatataac |
42536397 |
T |
|
| Q |
301 |
atacaactcaaatctgcaagagttttatttttatcctaaaataaaataaccataaagaatatgagttgataacaaaacagcaagtaacaacaaattcaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42536398 |
atacaactcaaatctgcaagagttttatttttatcctaaaataaaataaccataaagaatatgagttgataacaaaacagaaagtaacaacaaattcaca |
42536497 |
T |
|
| Q |
401 |
cttcaatagttttttgatttagagcaatgtatctccatctct |
442 |
Q |
| |
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| T |
42536498 |
cttcaatagttttttgatttagagcaatgtatctccatctct |
42536539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 144 - 438
Target Start/End: Original strand, 42530590 - 42530894
Alignment:
| Q |
144 |
agtattttgggtgatatgagacatcttacttgtattattagtagtacttttttcatcctgaaattctgaggtgattatgtgggatattgtgacagaag-t |
242 |
Q |
| |
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||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||| | | || |||||||| |||||||||| | |
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| T |
42530590 |
agtattttgggccatatgagacatcttatttgta------ggagtacttttttcatcctgaaattctgaggggttaatatgggatatggtgacagaaggt |
42530683 |
T |
|
| Q |
243 |
tcaaatatttgttcagaaattggagggtatgttactcaatt-atcatgcaaaatataacatacaactcaaatctgcaagagttttatttttatcctaaaa |
341 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||| |
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| T |
42530684 |
tcaaacatttgttcagaaattggagagtaagttactcaatttattatgcaaaatataatatataactcaaatctgcaagagttttaattttattctaaaa |
42530783 |
T |
|
| Q |
342 |
taaaataaccataaagaatatgagttgataacaaaac--------------agcaagtaacaacaaattcacacttcaatagttttttgatttagagcaa |
427 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42530784 |
taaaataaccataaagaatgtcagttgataacaaaacagagaagggaaaatagcaagtaacaacaaattcacacttcaatagttttttgatttagagcaa |
42530883 |
T |
|
| Q |
428 |
tgtatctccat |
438 |
Q |
| |
|
||||||||||| |
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|
| T |
42530884 |
tgtatctccat |
42530894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 42530396 - 42530537
Alignment:
| Q |
1 |
ataggttttattgtttcttctcaggcttcattgtaagcattatttttcttgtgattgttgcctaccatcctttagttgtttaaccagttatagagtgatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| | ||| | |
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| T |
42530396 |
ataggttttattgtttcttctcaggcttcattgtaagcattatttgtcatgtgattgtttcctaccatcctttagttgtttaaccagttatataatgaac |
42530495 |
T |
|
| Q |
101 |
ttgtttagggaaaatttttatgcatgcttttctttcactctt |
142 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42530496 |
ttgtttagggaaaacttttatgcatgcttttctttcactctt |
42530537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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